Clone hba-157p11

Clone and library  
Clone
Clone name
hba-157p11
LE_HBa0157P11
C03HBa0157P11
P157P11
Clone type
BAC
Contamination
none
Estimated length
124,715
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH map 
View on FISH map chromosome 3
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
217-02 1CompositeFluorescencePhase79.2%
217-07 1CompositeFluorescencePhase76.5%
217-08 1CompositeFluorescencePhase79.0%
217-21 1CompositeFluorescencePhase77.8%
217-24 1CompositeFluorescencePhase80.4%
217-25 1CompositeFluorescencePhase79.9%
217-26 1CompositeFluorescencePhase78.5%
217-27a 1CompositeFluorescencePhase77.4%
217-27b 1CompositeFluorescencePhase77.4%
217-28 1CompositeFluorescencePhase79.4%
217-30 1CompositeFluorescencePhase78.4%
217-31 1CompositeFluorescencePhase77.3%
217-32a 1CompositeFluorescencePhase77.1%
217-32b 1CompositeFluorescencePhase78.7%
217-35 1CompositeFluorescencePhase76.2%
217-36 1CompositeFluorescencePhase79.8%
217-37 1CompositeFluorescencePhase77.3%
Mean±sd78.3%±1.2%

Given an estimated length of 15.7µm for chromosome 3Q and the mean percentage above, this BAC is approximately 12.3µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
China
IL-mapped to chromosome
3
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 3 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 3
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'jianfeng-ren'
Full Sequence
116,570 bp
C03HBa0157P11.1
AC238454.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (172.48 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
 FTP
Chromosome 3 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (33)
1069, 1307, 1307, 1307, 1473, 1498, 1624, 1966, 1966, 2167, 2401, 2401, 2596, 2810, 2810, 2810, 3083, 3083, 3248, 3510, 3929, 4114, 4588, 4667, 4871, 4871, 6190, 6279, 6370, 6686, 8102, 8701, 10911
HindIII in silico (30)
1005, 1059, 1258, 1444, 1492, 1497, 1542, 1621, 1962, 2172, 2401, 2433, 2597, 2732, 3092, 3094, 3243, 3566, 3952, 4186, 4457, 4545, 4668, 4777, 5962, 6115, 6291, 8073, 8770, 10904
Fragment Lengths Match Score
0.94
Annotations  
Browse
LE_HBa0157P11 has no browsable sequence annotations
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End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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