### Clone hba-159c6

 Clone and library
Clone
Clone name
hba-159c6
LE_HBa0159C06
C03HBa0159C06
P159C06
Clone type
BAC
Contamination
none
Estimated length
104,190
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
 Physical mapping
 Fingerprint Contig Builds (FPC)
Tomato FPC (AGI 2005)
ctg3593 : [coherent], 3 members:
C03HBa0094F12, C03HBa0159C06, C03HBa0321F01
 Marker matches - overgo what's this?
Conflicted matches
None

 Marker matches - BLAST None
 Marker matches - manual None
 Physical map (from marker matches)
 FISH map
 FISH images
(percentage of arm length)
148-01 1CompositeFluorescencePhase96.7%
148-03 1CompositeFluorescencePhase95.8%
148-06 1CompositeFluorescencePhase98.4%
148-09 1CompositeFluorescencePhase96.3%
148-10 1CompositeFluorescencePhase97.7%
238-10 1CompositeFluorescencePhase95.3%
148-11 1CompositeFluorescencePhase96.9%
148-12 1CompositeFluorescencePhase97.2%
148-13 1CompositeFluorescencePhase96.5%
148-14 1CompositeFluorescencePhase99.0%
148-16 1CompositeFluorescencePhase97.6%
148-19 1CompositeFluorescencePhase95.2%
148-20 1CompositeFluorescencePhase96.0%
148-21 1CompositeFluorescencePhase99.1%
238-26 1CompositeFluorescencePhase95.8%
238-36 1CompositeFluorescencePhase98.3%
Mean±sd97.0%±1.2%

Given an estimated length of 15.7µm for chromosome 3Q and the mean percentage above, this BAC is approximately 15.2µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
 IL Mapping None
 Sequencing
This clone is being sequenced by the Chromosome 3 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 3
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Full Sequence
End Sequences
Warnings
• sequence is not finished to HTGS3
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly

Restriction Fragments
 HindIII in vitro (23) 1680, 1809, 2083, 2339, 2560, 2889, 3304, 3304, 3379, 3476, 3604, 3753, 3879, 3931, 4205, 4205, 4344, 4801, 5648, 5648, 6388, 7633, 19328 HindIII in silico (34) 1085, 1150, 1492, 1667, 1772, 1792, 1832, 2273, 2360, 2534, 2595, 2910, 3240, 3303, 3330, 3439, 3542, 3629, 3676, 3779, 3917, 3947, 4014, 4143, 4198, 4244, 4327, 4402, 4667, 5268, 5341, 6255, 7604, 16421 Fragment Lengths Match Score 0.81
 Annotations
Browse
LE_HBa0159C06 has no browsable sequence annotations