Clone hba-34p21

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Clone
Clone name
hba-34p21
LE_HBa0034P21
C01HBa0034P21
P034P21
Clone type
BAC
Contamination
none
Estimated length
145,747
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg556 : [coherent], 1 members:
C01HBa0034P21
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
604-04 1CompositeFluorescencePhase53.0%
604-08 1CompositeFluorescencePhase57.2%
604-12 1CompositeFluorescencePhase56.2%
604-16 1CompositeFluorescencePhase55.5%
604-25 1CompositeFluorescencePhase57.3%
604-28 1CompositeFluorescencePhase55.2%
604-39 1CompositeFluorescencePhase54.9%
604-40 1CompositeFluorescencePhase56.3%
604-47 1CompositeFluorescencePhase57.8%
604-62 1CompositeFluorescencePhase53.4%
604-74 1CompositeFluorescencePhase51.8%
604-88 1CompositeFluorescencePhase54.2%
Mean±sd55.2%±1.9%

Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 11.1µm±0.4µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
USA
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
109,076 bp
C01HBa0034P21.4
AC238507.7 (GenBank)
[View]
[Download fasta]
[Download full submission] (0.07 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (34)
1098, 1262, 1439, 1456, 1522, 1542, 2116, 2172, 2216, 2216, 2412, 2443, 2517, 2517, 2731, 2885, 3133, 3205, 3277, 3277, 3427, 3588, 3900, 4915, 5535, 6293, 6559, 7548, 8230, 8597, 8934, 8934, 10658, 13193
HindIII in silico (28)
1104, 1136, 1227, 1285, 1474, 1510, 1825, 1907, 2116, 2130, 2149, 2150, 2271, 2512, 2760, 2760, 3220, 3225, 3267, 3276, 3563, 3571, 4287, 4743, 6931, 11243, 13247, 13459
Fragment Lengths Match Score
0.88
Annotations  
Browse
LE_HBa0034P21 has no browsable sequence annotations
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