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Clone hba-229b1

Clone and library  
Clone
Clone name
hba-229b1
LE_HBa0229B01
C00HBa0229B01
P229B01
Clone type
BAC
Contamination
none
Estimated length
113,777
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg180 : [coherent], 4 members:
LE_HBa0032F09, LE_HBa0151F03, LE_HBa0173A15, C00HBa0229B01
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is registered to be sequenced, but has not been successfully mapped to any chromosome.

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Sequencing Project
Chromosome unmapped
HTGS phase
1 - fragmented, unordered
Sequencing Status
complete
Sequencing Organization
The Centre for BioSystems Genomics
Full Sequence
116,348 bp
C00HBa0229B01.1
AC216654.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (230.11 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (22)
1501, 1516, 1983, 2002, 2183, 2348, 2542, 2542, 2779, 3035, 3035, 3480, 3932, 4107, 4373, 4937, 5573, 5573, 5945, 8715, 10950, 30726
HindIII in silico (29)
1031, 1169, 1277, 1310, 1444, 1500, 1501, 1503, 1962, 2163, 2422, 2543, 2561, 2779, 3011, 3032, 3424, 3956, 3996, 4085, 4367, 4757, 4774, 5583, 5633, 5730, 6266, 11541, 14483
Fragment Lengths Match Score
0.84
Annotations  
Browse
LE_HBa0229B01 has no browsable sequence annotations
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