Clone Read LE_HBa0144D21_SP6_100408

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0144D21_SP6_100408
Primer
SP6
ID from Seq. Facility
LE_HBa_144_D21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
711 trimmed for vector and quality, 789 raw
Genbank Accession
DU091310
Sequence
>LE_HBa0144D21_SP6_100408 (raw untrimmed)
CTTTCTGACGCCCATTGGCTAGAGAGGTTCGGCCTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTAGTGCGGAGTC
AAGATCTTCTTTTCTTGACAAAATTAAGGGAAAACAGTTTGATGATGAGAAACTAAGGCGAATCTAAGATAAAGTATTGCGAGGGGAGGCTAAGGAAGCA
CAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAA
GGTATTCTATACATCCGGGCGCAACCAAGATGTATCGTGACCTAAAACAACACTTTTGGTGGAGTAGAACGAAGCGTGATATTGTTGACTTTATTGCCAA
GTGTCCAAACTGTCAACAAGTAAAGTATGAACATCAAAGGCCTGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATG
GACTTTGTGGTTGGTCTTCCAAGGACAATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTAAAGG
TGACTTACAATGCAGAGAAGTTAGCCAAGATCTATATCTCAGAAATCGTTCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACACAGTT
TACTTCTATGTTTTGGAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCTCAAACCGATGGTCAGT
>LE_HBa0144D21_SP6_100408 (trimmed for quality and cloning vector)
TGGCTAGAGAGGTTCGGCCTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTAGTGCGGAGTCAAGATCTTCTTTTCT
TGACAAAATTAAGGGAAAACAGTTTGATGATGAGAAACTAAGGCGAATCTAAGATAAAGTATTGCGAGGGGAGGCTAAGGAAGCACAAATCGATGAGGAA
GGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATC
CGGGCGCAACCAAGATGTATCGTGACCTAAAACAACACTTTTGGTGGAGTAGAACGAAGCGTGATATTGTTGACTTTATTGCCAAGTGTCCAAACTGTCA
ACAAGTAAAGTATGAACATCAAAGGCCTGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATGGACTTTGTGGTTGGT
CTTCCAAGGACAATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTAAAGGTGACTTACAATGCAG
AGAAGTTAGCCAAGATCTATATCTCAGAAATCGTTCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACACAGTTTACTTCTATGTTTTG
GAAAACATTGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971943
Expected error %
0.0759056
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 316 E Value 4e-85 Identity 20.80% Align. Length 701bp (98.59%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 316 E Value 4e-85 Identity 20.70% Align. Length 704bp (99.02%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0144D21
Clone
Clone name
hba-144d21
LE_HBa0144D21
P144D21
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found