Clone Read LE_HBa0156B03_SP6_101812

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0156B03_SP6_101812
Primer
SP6
ID from Seq. Facility
LE_HBa_156_B03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 877 raw
Sequence
>LE_HBa0156B03_SP6_101812 (raw untrimmed)
GTGGAATTTATCCCATGAACACATCCGCTCTAAGTTGGGATCGCGCAGCCACTATGANATCAGTAACCCGTAAACAAAGAGTTGAGTGCTCGCCTACCTG
TCCCACCACCGCTCTCAAGTTCGGCAACCGGCACCTCGTCCATGCTGCAAAATTTTATATCAAGAACATGTACATTTCCAAATGACAGACGAGGATAACA
GTATAAACGATGAAAATCGTCGTCTGATGGCTATAGTCATTTACCCATGTGGAATGTCGTATGTGCCGACATGTCTATGGAAGGTATCTTGACCAGCGGA
GTATGTGATGTGGGCATTCGAAAACAAGCAGAAGAAAGAGCCATTCATGA
GCATTTTACTCTTCACGCAGGATGGAAGCCAATGCTCATCAACTAACATA
GACAATACTCGAGTCCGGTTCGGCGGAACCAAACACGTCTCGTGCTAGCACACTGCGCAGCATGTCGTCGTACGACCAATATATCGAACTTCCAGGTCCT
CGCCCTGCTGATATTCGAATCATCACGCAATATTTTGTATCACCCACTCCTCAGACGTCCTCATTGAATATCAAGATTCTCACCTCTATTCGTCAACTCT
AAAGTCCATGTGTCACGTAAGTTCTTACTCACCTCTACACGACCCCTCCTAATGCTTCACTGTGTGGTATTTTTAGTTCTCTGTTAGTAATTATCTTAAT
AGTTCATTGGCATTACTTTCATCACTCTCCTCGTGCACCAAGTCCTCTCTGCTGGCACTCCCACCAACACGCATAGGTGTATAATCTCACTGAAGAGCAC
CCGCGATCCATCTCACGCAACACTATTAGCCACACCTGAAGGTGTGGCCTGCCATGATTATACTACGTCGCTGCATG
>LE_HBa0156B03_SP6_101812 (trimmed for quality and cloning vector)
GCATT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.363536
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0156B03
Clone
Clone name
hba-156b3
LE_HBa0156B03
P156B03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found