Clone Read LE_HBa0156M20_SP6_102374

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0156M20_SP6_102374
Primer
SP6
ID from Seq. Facility
LE_HBa_156_M20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1774 raw
Sequence
>LE_HBa0156M20_SP6_102374 (raw untrimmed)
CTGCGCGAGACAGTAGACCGGAGAGATATATATGAGACCACACAGTACCCTGCGTATTACCACTCTGTACGTCGNATCGACTATAACGAGGCACTAGCAT
AGNCGTCGAGTCAGCTGGCAGTGGCTCCTGGAGGAGTGTC
AGCTGTNAGGAATGAAGAGGAGTANCTCCCCCCCCTCGTCCTCGTGCNGNGCTGCCGNCG
NAGCNCCAGCGNTGGCTGGGGCGTGTATAAGTNCGACGTNGTGCTGTAGAGCACGCGGGGCGCCCGCCACTTTATAGGAGCANGCAGAGCTCTCTGCTCT
GCGACAGTGACTATGTGAAGGTAGGGTGCGCGCTAGCCGTCGCANCAGCGACTGTAGACGNANGTACCANGAGCACGGGCTGGAGCGGCTGCACGTATGT
GCGACGTGCTACGCTGATNACGTGCTATCGTCTGCTCGATACGATGCTGNCNNCAGATACCTGACAAGNCACACTAAGATAGCATCATGCTAACTGACGA
GCAGATAGACAGAGCAAAGTAGACCNAGGAGAGATCAGATGAGCTCGACATCACGCGTAGCATGACACAGTGCACATGAGACACACACACGCGCGGGCCG
ACAACCAGNCGCATGCTACCAACACTTNCACTACGCCACCCTCCGCTCATCTACNAGTACGATACGTAGGCACTCTGCGTGACTACACACTGCCACCGCC
ACTCCACGTCGTCCAACGATACCCAACGCACACGATAGNATAACGAGCGAGCGAGCTCTACCAGAGAGAGGGGCACTGATGCGTGAATATNTGAATACTA
TCAGATGCACACATAAGCATACGCTAGTCTGAACTAGTACGTANCAGTATAACGACTAGGATACCTCNATGATAACNAGNATAATTGAGGATAGAANTGA
TCGTACATTACGAGATATGANANANATGNTATGGTACACATCAAATGCTTATANCATACAACANATGCCGAGTAAGATGTGTTGCTGGNGTACNACACAC
ACGAGCCGCACTAAGGAGATCATGATGCCGACATCTCACATTCTTGANCACGACGTCTCTAGGCCATCGAGTCATCTACCTCATCGACATAGTATCAGGC
CGTGAATACATCTCACAGAAGACGAGACGAGACACGAAGATGGACGCATCTAACGACGTACGCACCCCCGCCGCTGCTTCAANNNCCCCNGCGGNNTGNN
TTTNGTNTNNNTNTNNTNGTGTTGTGGNTNTNNTTTTTTTTTTTTGTNNNTTNNTGGNTNTTNNTTTNTNGTTGNNGTGTTCGNNGNTGGTTGTNTGGGT
GGTGGTNNGTTNGTTTGTGGGNGGTGTGTGNGGGTGGGTGGGTGTGGTGTGNNGTGGTGTGNTNGTGTGTGTTTGTGTTGTGGGTTGTNGGNTGGTGTGT
GTGGGGTGTGTGGGTGTGGTAGTGTTGTNTGGTGTGTGTGGTGGNGGTGTTCAANGGCCGCNTTNTTNTNTTNNTNTTTTTNNTNTNTNNTNTNNNNTTN
TTNNTTTNNNTTTTNNTTTNNTTNNNNTTTTTNNTTTTNNTTTNNTTTTTTAGTNNGTTTGNNNGTTTTTNTTNNNTTTNNNGTNGTNTTNGGTTNTGGT
NTGGNGGTNGGTGGNNNTGGGNNGGTGTTGGTGTGTGTGGTTNGTGATGTGTTGGNTGTGTTGTTGTGGTTGTTGTNGTGGTGTGTNTNTGTGGTTGTGT
TNGTGTGTGTTGTGTGTGTGTTGTGGTNGTGTGTTGTGGTTGTGNGTTGGTGGGTGTTGGTGGTGGGGTGTTNT
>LE_HBa0156M20_SP6_102374 (trimmed for quality and cloning vector)
AG

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
8.23994
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0156M20
Clone
Clone name
hba-156m20
LE_HBa0156M20
C08HBa0156M20
P156M20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found