Clone Read LE_HBa0158G10_SP6_102834

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0158G10_SP6_102834
Primer
SP6
ID from Seq. Facility
LE_HBa_158_G10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 876 raw
Sequence
>LE_HBa0158G10_SP6_102834 (raw untrimmed)
AGGCTCGCCGGCCGCAAGCTCGATGCAATTCCCCTTTCTTTGAGGGTGTGGGCCGCTGGACATCTGCTCTGGGAAGTGGACAATGATTGAAGGCAGCTGT
CGTACAGGACGATACTTTATATTGAAGCGGGGACTATGAGATGGACAGGGGGTGTCATCATTATACTGCATCATACTGACCTTCTCGTGTAGTGATATGT
TTAATGACCCGAAACGGTACACACTACAGAGATACTCGCCACGCGACCCACTCAACCACAGACATAGTCACCAGACCCAGCTACTGTCATTAAGATAATC
GTCGACTGAATTTAGCGTCGCGTGAAGTCATGGGAGTTGTGTGTTTAGTCTGTACAATTGATAGAGATGCACAAACGACTATTCGGCGATCGCGGAGGTC
TTATCAGCGGAGTAACGTATGAACAGTCCATCTTAGCGCACTGCTACTAGGTACATTTGTATTCAGCACACTCCTGCTACACCAACATTATAAAGATATG
GAACATAATGACGGCGTCTTGGCGCGCGACCGCGGCGCGCGGTTCGCATCGCTGCAGACGGGACCCTCGAGACTGAGGCACGCACCACGACGCAGAAGAG
TATACCAAATCGCTAAGATTACTGACTATGAAAGATCAGATACCAGAATATAGGAACTTCGACGTCTCTCCTCTATCACTTACTCAGTATCTATGACGAA
ACTTAGTAACACTACTACATTAACGATAACGTCTGATCTGTAAGTCATCTCTCCGTCCTCTGCTGACTCTACACTCCATTTCCCTAGGCATTCCACTACC
TTCACCTTCCTTCTAGAGCTCATTTGCAGATCCGATGAACATTCAGCGCCCGCACCTCTCACCACGCCCTGCCGCC
>LE_HBa0158G10_SP6_102834 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0158G10
Clone
Clone name
hba-158g10
LE_HBa0158G10
C03HBa0158G10
P158G10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found