Clone Read LE_HBa0162B16_SP6_103374

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162B16_SP6_103374
Primer
SP6
ID from Seq. Facility
LE_HBa_162_B16-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1174 raw
Sequence
>LE_HBa0162B16_SP6_103374 (raw untrimmed)
CGTAAATAAACAGCGAAAGCATGCAGAGAAAGGAAACACAGAAGAAGACCATAACATGAGGATGAATACTACTGAGAGGGAAANAATGAACTCAAGCCAA
ACACCCCCTTTACAAGAGGCGTCTAAGCTCGTAGCGAGGTCTACATAGACTACAAGGAGGCCCCTATTAAGGAGAATGATCATATAGATCAGATACGAGA
AAACCAGAAAACAATACTCAATAATAACGATCATGGCATCTACGGCGAGTACCCATCGCACCGGACAGAAACGCAACCGACCGCAATACGAGTAGACCTT
ATGAGCAGCTCATGCCAGAGCAACTCGCCGCCTAATAGGAGGACAATAACGAGAACCCGAGAAGACGANACAGGCGGCNAGTCANACACCTAAACGACAT
CAACAATGGAAAAAAAGCGAGAAGACCATTACTCACCACCTGATGTCCCCGACGACGAAGCACAGCACAATTCACCTTGCATGAAGAGGACCGGTAGATG
GCGCCCGCCCCTAATACAGACCATTACGCTACAGAAATGGTTGAATTAGTGCAGTATAATCGTGAAATAAACAAAACGACACTCGCGAATCCATCCGCTA
TCAGCAATACCGGGCAGGAACAGAGACGGAAGATGCAGGAACGTGCGATACGAGCATATCACACAACAGCGAGGGAGAGGGCGGTGGCGGGGGGAGGCTA
GAAGTGGAACCTCACCATGCGCGAACTTGCCGCGGGAGATGTAGTAGCACCTCGACCGGGCTGCGGACAAATGCTCATGACCGATCTAGGCACAGCCGAA
CCCCGGCCAATACCAAAGACATACCAACCAACAGCCACCAAACTCCACCGCCACCCAGCACCGCAACACCACCACCCGCAAGACCATCGCCGACACAACA
ACCAAATT
AAAATATATTGTCAGGGGCGGGTGAGGAGAACGGGAATAAAGACGTACCTAGTCCCTGGACGAAGCGAGGAAGAGAATCGAATAGAGAGATG
TTCTGACACCTACCATCCAAGAGGACAGTAACCCGTTGCGGGAGAGCGGCGCGCGGAGTGGCGCCCATATTACAAGCGAGCCCCAACGATATCATTGCAC
CTGTGAGGGTTTACATCGGAGATCGGAATTTACAACGCCGCGGCGGCGGTCCAGCGCACCGCACTGCTCCATTT
>LE_HBa0162B16_SP6_103374 (trimmed for quality and cloning vector)
AAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.90004
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162B16
Clone
Clone name
hba-162b16
LE_HBa0162B16
P162B16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found