Clone Read LE_HBa0162L03_SP6_103828

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162L03_SP6_103828
Primer
SP6
ID from Seq. Facility
LE_HBa_162_L03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
40 trimmed for vector and quality, 823 raw
Sequence
>LE_HBa0162L03_SP6_103828 (raw untrimmed)
ATTTCTATGAATACCCTTAATATTTCACTTGATAAAAGCCCCAAAGGGTTGACGTTGTAGGGACTAGTGACTCCAATAAAAGGCCCCCCNCTATGCCAAG
NGAACNAACACAAACCCTTTTAGAAAGANNNNAANANGNANNNGAGAAAGNNNAAAGGGGNAGAGGGANNAGGGANNNAGGNNAAAAGNNGAAGNNNNAG
GGNAGNAAGAAANAGGGANAGGNANANNAGNNNNGAGNNANAANAGNNGAAANNGGNAGAAAGGGGAGAANNNNAAGNNANAAAAANANANGNANNNANN
NGAAAAANNGGGNGANANNANNNNNNAAANGNAGAAGNNNGAAGAGAAGAGAGGAAAAGAGAGAGAAAAAGAGNAAAAGAGAAAGGANGAGNNNGAAGAN
NNGNAAGGGGAGAAANNAANNNNNNAAGGAAAANANGGAAAAAAGAAGNGGGGAGGAGAGGNAGAAAGAGANNAAAAAAAGAAGAGAGAAGAAAGAAGAG
AGGAGAAANAGGAAAGGAGGAAAAAAGAGGGAGAAAAGAAGAAAAGAAAAGGAAAGGGAAGAAAANGGAAGAAGGGAAGAAGAAGAGAGAGAAAAGAGAA
AAAGAAGGAAGAAGAGAAAAAGAAGGAGGGAAGAGAAGAGGGGAAAAGGAAAGAAGAGAAAGAAGAGGAAAGANAAAAGGGAAAGAAAAGAAAAANANAA
AGAAAAGAGGGAANGGGGNGAAAGNGAGGGAAGAAGAAAAAAAAGGGGAAAGGGAGAGGAAAGGGAAGAAAAAGAAAAGAAAANGGGGGGGAAGAANAAG
GANAGAAAAAAAAAAGAGGAAAA
>LE_HBa0162L03_SP6_103828 (trimmed for quality and cloning vector)
TGATAAAAGCCCCAAAGGGTTGACGTTGTAGGGACTAGTG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.871046
Expected error %
1.48665
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162L03
Clone
Clone name
hba-162l3
LE_HBa0162L03
C02HBa0162L03
P162L03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found