Clone Read LE_HBa0172F09_SP6_104320

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0172F09_SP6_104320
Primer
SP6
ID from Seq. Facility
LE_HBa_172_F09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1177 raw
Sequence
>LE_HBa0172F09_SP6_104320 (raw untrimmed)
TCCGCGGGTTATGTCACAACATAGGCGGTCGTTTTGTACGGGGTCGTCTCTATGATGCTAGTGGTATATAAGATTTACGAGTGTGTTTTGTNGGCTCATA
TAGTATTCACTTTCCGTATATGTGGAATGTAGTGAAGTTGTCTGTGGCAGACTCATAGTAGTACATCGATCTACTCTTGAGAGACTCTTAGTACTGGTTT
AGTTGGATTCTTGGCTTCGTGAATGGTTGGACGAGATACGTTCATCTTAGCTAAACGAAGTAGGATGGATGACAGGAACAAGATGCTCCTATGACTCTCT
AATGATCATGTGCTAAGCTTGGTATGATCCGAGCACATGGACGTATCGTTATGCGAAGATATAGGATAATG
GCGACTGTTTGTGCACGATCTGCGTCTAT
CATTCTTCTCTATCGTGTATCAGCTACTCGCTTCCCAGCCAATCTCAAACTGTTCACTAGTTGGACAGAGTGGGAGACGCTTAAAATGGTAGATATAGTC
GGGATAATGGACAAAGTTATAATCTACGAACCTTATAGTTGGTATATTCGTTCAGTCATTACACACGCAAGCGACGAGTGCATTGTTATTTTAACNAATC
GCCTCGACTCCTGAGTAACATTACAGACGAGGACACTCTCAGTGGCCGCACTCCACTCGGCGTCTGACGATCACCTTGCCACAGACAAACAATAGATAGG
ACGACTGTAATTATCTCAGCTACATCCTCGTGTACACCTTACAAAACTCTCGACTATTTTCTCCCTATCTGCACGACGCTATTGACTCTCCTCACTTCTG
AATAGCACTCTCTCTCCGTCTGTCTGCGTCTCNCTGATCGTGCGCTGCGCCGCACGTATCCCGTGTCACTCTGGCATCTACTATGATATCTGTATCCTCT
CTGTACACCTATCAGCGCCTCACGCATCTATTCGTTGCCGTTCTTTGTCTCCTCCGACTGTTATCGTATGCTTATATTCTATCAACATNCTCCATAATCT
TCATAATCCCTCCACAGCACCCCAACTCGTGTGTACTATATACATATCTCCATTCTCCTCCCTGCCTCTCATCGNCTCTCACTGTCATCTCTATCTCCTT
GTATCTCTCTCCTTGCTTTTCATGCTGTTGCGTTATCATGATACCATGTGCTCGTGGTAGCATATCGACGGACTCAN
>LE_HBa0172F09_SP6_104320 (trimmed for quality and cloning vector)
GC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.70673
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0172F09
Clone
Clone name
hba-172f9
LE_HBa0172F09
P172F09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found