Clone Read LE_HBa0189A22_SP6_106410

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0189A22_SP6_106410
Primer
SP6
ID from Seq. Facility
LE_HBa_189_A22-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 1179 raw
Sequence
>LE_HBa0189A22_SP6_106410 (raw untrimmed)
TCGCGCGAGTGTTTTCCGGCCAGCGAATTCAGCGTCCGCAGGGGAAAGTAGGTCTTTTTACTCTAAGTTTAGTATTAGTGCTGCCGGGGTAGTTTTAGCC
TTATATCGTGTGATCTTTATTGAATTCCTACCCTTGTGTACACGTGTCTCTCTTCAAGATGAGTAATGTCTTGGTTTTATGAACCATATCTACATTTTGT
GGGTATTACCATGTGGCGTTGACTCTCTAGCATCTGACTAGGGTGATCGTTTACAATGTTATTTGTTAGTGACACATCGGCTGACCTTTCGGGCTTTTCA
ACATGGAGAATCTCTTTGCGTTGCT
CAATCTCCATCTTACATTGTGGAGACTACCGCTCATACTCCATCCGGTACATTATCTACAATATTCCTTACGTTT
CTCGATTTCCTCACTCTTATATCCACTGCACCAACCTGCTTCATTCAACATCTGCAACATCACTACCTTATGTACCACTATACGATCTATGTTAATCTCT
AGGGAGAGGACAGTCAATTATCAAAGATATGACCATGCAATTCTGAGTTGTCTGAGGCATTAGCTATCATGCTCAGAGACGCTCATTATACGCATTGGAC
ATTCATGTAGACATGGTAACAATTGGATGAATACTGAGATAGTAGGACAACCACCATTATTATGGTAGCTCCAGGTATTACATCACCTATATTATTTTTC
CAATAGTAAGTAAATTGTATAGAAATAAATCCTGGCACTCGTACCAACCTAAGAAGTCTAGAAGAGCCAACCATGCTAAGAGGGGCCTCTTGATTGTGTA
TGTCTGATAAGAATGTCACACAATTCACTTACCTAACCGGCAAAGCTCATGTGACTTGTGCATCTGAAAAAACTCCAGGGCCCAAAAAGGGGATTAAAAC
CTCTGTCCAGCATTACATAGTTGGTATTTTGCATTAAAAATTACGTGGGATTGGCACATTTCAAACATACAACATGGGAATATTTGTCTACAAAAAAGAA
ACAATAAAGAAACCAAAGAAAACAAAAAAAACAACCTTAACCCCCGCGCCCCTACAAGGCTTATACTCTCTTTTTATCAGAGGGATTAATTTTTATATCT
TGGCGCCTCTGGCCCACCCCTATTAACCACCCTCTCGGACACCGGGAAAAACCCTGCGCTGTTACCCCAACTATAACCG
>LE_HBa0189A22_SP6_106410 (trimmed for quality and cloning vector)
CAAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.585254
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0189A22
Clone
Clone name
hba-189a22
LE_HBa0189A22
C12HBa0189A22
P189A22
Clone type
BAC
Contamination
none
Estimated length
79,025
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found