Clone Read LE_HBa0189N24_SP6_107038

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0189N24_SP6_107038
Primer
SP6
ID from Seq. Facility
LE_HBa_189_N24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1459 raw
Sequence
>LE_HBa0189N24_SP6_107038 (raw untrimmed)
CACATAGCGTGGCGAGCATAGAGAGCANGTATAAGAGTCCACGAGAACAGTGGCATACTTATTGTGTTGTANTGCGCAGATAACATACATGCTGACTACT
AGAGCAGCATCTAGCGCATATCACTCACATCACTATCAGCGANAGAGTGTGTAGCTTAGCCTATCTAGATACAGTAAGTATGCACGCATCNCATATTTAC
TAATAATGCACTACTGTGTGACNCATTCTCATCTGTGATGNCACTAGTAGTCTTGANTACTCTATACCNTCTTNCGCATNCACNAACGACGGCAGANCGC
ACACGCTATAGAGAGATGATAAGGTTAGTGCANCACGCGAAGCACGCTAGCTGTGCANGACANGGATANGTCAGTGANTATAGGNACGCTACACTGCNGT
ACGTGTATCACCTATAGCGCCTACGGACACTACTACAGAGAGAAGCTCAACATGCGANATACAGCCACGCATCACTCATACAGACTGTTGCATGTACGCT
CTGANCGCGAATCGTCTCGCGGAGCGGACGATGCGCGAAGCATAGTGAGAGCAACATGATACGAATACATGATAGATACTGCAGCAGATAAATGTGATGA
GGCTATAGTATCNCTCCACGTAATCTACACCTAGCACGTGGCTGAGTGCTATNTGCNT
CACATGCTGTTCACACTAGATACAACATCTACGCGATACAGA
GCAGACAGAGACTGACGCACGAGTACAAGCTATCGACAAAACTGCACATCACTCTCGCCACACTCTCATGTAGAAAGANCNACTAGGATGTGGNGTAGAC
AANTGCAGAGAGATACACAGACTGNGTATAGATATCATCATGCTCCGTACGATATGCTTNAGCTCTCGACTCACGAGNAGATAGATGCATACTGCACTTG
CTATANCTCGCGGTNGAAGCNGNGATGCTACACGGTAGANGTACACTCATGCGCCAGTGTTNCATNATGCCNATTCGTATACGATCGATGACGTNCTCGC
NGANANACTAGATAAGTCCTGTATTCACAANTACAAGGTATNAGTATCACACCNGCTGTACTATCGACACGGATGACATCTCATCTCACAATCGTAGCTA
CGTGTCACATATATGTTGAGATGTAGCCGANACTGCNTGNGNCNGACACTGATTAGTGCGTCTGATGCACGCTNCTGCANTGTGCGGCGAACTNGCTCCG
CTGTATGTATACGGCGTATAGGTACTACGTGCTTGAGAANTACTCGACGTCTCACGCGACTACACGATCGCGTCGCGTGGCGGTGNAAGTAGCACAGATG
CGACGTTGGTATAGCGCNGCAAGAGANGNGCNATNGCANCNTGAGANCTGCGNGTAGCTGATCAAGNCAGATGNTCGACGATGAGCGTTACGTGATTGTT
GATAGTGAGNACGAGTGTGGCACGCGCTGTTTTGCTGTATGCATGTGCCCNTGTTGTGC
>LE_HBa0189N24_SP6_107038 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.65311
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0189N24
Clone
Clone name
hba-189n24
LE_HBa0189N24
P189N24
Clone type
BAC
Contamination
none
Estimated length
139,082
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found