Clone Read LE_HBa0190C20_SP6_107270

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190C20_SP6_107270
Primer
SP6
ID from Seq. Facility
LE_HBa_190_C20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
574 trimmed for vector and quality, 808 raw
Sequence
>LE_HBa0190C20_SP6_107270 (raw untrimmed)
TACTTCCCCTAGCTTCAGACCATTAAACTTAATTGTTTTCTGAGTCAACTTGGTCAACAGAGACGAACTTTATGAGAACCCGTCAACAAACCTTTTGTAG
TAGTCAGCCCTTTCAAGAAACTCTTAATATCAGTAGGAGATATGGGTCTAGGACAACTTTAAACTGCTTCTATTTTTTGGATATCCACTCTAATTCTATC
ACCGGAAACTATGTGGCCTAAGAATTCCACAGACTTAAGTCAAAACTCACACTTGGAGAACTTGGTGTATAACTCCTTATCTTTCAAAGTTTGAAGAACT
ATCCTGAGGTGACTAGCATGATCTTCTTAATTCCTTGAATAAATTAGTATGTAATCAATGAAGACGATAAAAAAACATATCTAAATAAGGTTTGAAGACT
CTATTCATGAGATCCATGGAGGTTGCAGGCACATTGGTCAAACAAAGGACATAACCAAAAACTTATAATGCACATATCTGGTTCTAAAAAAATTGCCTTT
GGGAAATCACATTCCCTAACTTTCAACTGATGGTAACCTGATCTGAAATCAATTTTCGAGAAGCAGAAAGCACCCTGAAGCTGGTCGAAAAGATCATCTA
TCCTTGGAAGAGGATACTTATTCTTGATGGGCGCCTTTATTCAATTGGCTGTAGTCCATACACATTCTAATTGTACCATCCTTTTTTTCTTTAAAATAAT
GACCGGATCTCCTCTATGAGAGACACTTTGGTCGGAATAAAATAATTATCCTATTTAATTTTTCAATGTTTCTTTCTAATTTCTTTAAACTCTAAGGGGG
GTTATTTG
>LE_HBa0190C20_SP6_107270 (trimmed for quality and cloning vector)
ACTTAATTGTTTTCTGAGTCAACTTGGTCAACAGAGACGAACTTTATGAGAACCCGTCAACAAACCTTTTGTAGTAGTCAGCCCTTTCAAGAAACTCTTA
ATATCAGTAGGAGATATGGGTCTAGGACAACTTTAAACTGCTTCTATTTTTTGGATATCCACTCTAATTCTATCACCGGAAACTATGTGGCCTAAGAATT
CCACAGACTTAAGTCAAAACTCACACTTGGAGAACTTGGTGTATAACTCCTTATCTTTCAAAGTTTGAAGAACTATCCTGAGGTGACTAGCATGATCTTC
TTAATTCCTTGAATAAATTAGTATGTAATCAATGAAGACGATAAAAAAACATATCTAAATAAGGTTTGAAGACTCTATTCATGAGATCCATGGAGGTTGC
AGGCACATTGGTCAAACAAAGGACATAACCAAAAACTTATAATGCACATATCTGGTTCTAAAAAAATTGCCTTTGGGAAATCACATTCCCTAACTTTCAA
CTGATGGTAACCTGATCTGAAATCAATTTTCGAGAAGCAGAAAGCACCCTGAAGCTGGTCGAAAAGATCATCTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953465
Expected error %
0.574744
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 147 E Value 3e-49 Identity 65.30% Align. Length 522bp (90.94%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 147 E Value 3e-49 Identity 65.30% Align. Length 522bp (90.94%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190C20
Clone
Clone name
hba-190c20
LE_HBa0190C20
P190C20
Clone type
BAC
Contamination
none
Estimated length
90,275
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found