Clone Read LE_HBa0190F02_SP6_107378

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190F02_SP6_107378
Primer
SP6
ID from Seq. Facility
LE_HBa_190_F02-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
83 trimmed for vector and quality, 712 raw
Sequence
>LE_HBa0190F02_SP6_107378 (raw untrimmed)
AGGTGCCACCCTTTATTAAGTAGGCTCTGTTCACTCCTTCAGTTGCCGGAGACCCCTTTTCTAGCAGCTTTGGTAGCTAGCTGCTTCCTTGGGGCCTTCC
CACCGGTGGATATACTAGCTGTTTGCTTACCAGGTGCCATTTGAATGTCACCTGTGTCTGTTGCTGTGCCTGCAATGTTGCATGAAGATAGAGGACGGGA
AGTAAATAATTTATTGGCTTTTTAGTGATTTATAGCGAATCCTGAAAACCGTATTAAATGTATTTGTTCTCTTTTACTCTTTCCTTATACACCCATCAAC
TCTCTCTCTCCCTACTGTTTTTCACTTACCCCTTTTCTAAACCTCCTATCCCCCTGTTTGAATTTCTTTCCCCCTCCACCTTATTCCTAATCTCTCCTCT
CCCTCTCTCTCCCTCTCTTTCCTCTCTTCCCATCTGTTTCCTTCTTTTCCTCCCTAAGACACTCTTAACTTTCTTCTCCTCTTTTTTTTTCTCTTCTATC
TTTCTACTCTTTACTCATCTAATTACTTTCTTCTTTCTCTTTTCTGCTTTTTTCCTCCTCTCTTCCATTCATACCACTATTTCATTCTTCTCCCCATTTT
CTCTCTTTCTACCCTCTTTTTGCTTTTCTTTTGTCCTTCTTCTATTTCTTTACTACATGTTTCTTATGAGATCCTCATACTTTTTACTATGTATCCTCCC
TTGTTATTTTTA
>LE_HBa0190F02_SP6_107378 (trimmed for quality and cloning vector)
CAGCTTTGGTAGCTAGCTGCTTCCTTGGGGCCTTCCCACCGGTGGATATACTAGCTGTTTGCTTACCAGGTGCCATTTGAATG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.886457
Expected error %
1.9834
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190F02
Clone
Clone name
hba-190f2
LE_HBa0190F02
P190F02
Clone type
BAC
Contamination
none
Estimated length
127,474
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found