Clone Read LE_HBa0190G05_SP6_107432

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190G05_SP6_107432
Primer
SP6
ID from Seq. Facility
LE_HBa_190_G05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
643 trimmed for vector and quality, 818 raw
Sequence
>LE_HBa0190G05_SP6_107432 (raw untrimmed)
GTTTTCCAAAGAAATAAGCTCAGCTTCTGTAGTAGATAGAGCAACACANTTTTTGCAACCTAGATTGCCCCGTTACAGCTCCCCCTGCAAAAGTAACCAA
GTACCCTGAACCCTACTTGCGAGTATCAACATCACCAGCCATGTCTGAATCAGTATAACCACAAAGAGTAGGCTTCCCTGTACCAAAACACAAACTCAGA
CTAGAAGTGCCACAGAGATATCTCATAACCCACTTCACAGCATTCCAATGTTCTCTTCCCGAATTAGAAAGAAAATGGCTAACAACTCCAACAGCGTGAG
CAATATCCGGTCTTGTACAAACCATCACATACATCAAACTACCAACAGCTGAAGCATAAGGAACTTTCTTCATATCTGCCTTCTCATCATCACTAGAAGG
ACACTGTTTCGTGCTCAATTTGAAGTGCATAGCTAAAGGTGTACTGACAACCTTAGCTTTGTCCATGCAGAATCTGCGAAGTACTTTCTGAATATACTTC
TCTTGTGATAATACCAATTTCTTGGCCTTTCTATCACGGACAATCTGCATGCCAAGAATCTGCCTTGCTGGTCCTAAGTCTTTCATAACAAAAGACTTAC
TCAACTCTTGCTTCAACTTCTGAATCCTGCAAGTATTATGACCAACAAACAAGCATGTCATCAACATAAAGCACCACAAAAATAAAGTCACCTTCAAAGA
ACTTTTGCACAAAATATACAATGGGCTGAAAAAGTCTTTTTGAATTCCCCTCTTGATTTTTAAAAAAACCAAACATCCATTAACACATGCCTTGGGAACC
TTGTATCAACCCATTTAA
>LE_HBa0190G05_SP6_107432 (trimmed for quality and cloning vector)
TCAGCTTCTGTAGTAGATAGAGCAACACANTTTTTGCAACCTAGATTGCCCCGTTACAGCTCCCCCTGCAAAAGTAACCAAGTACCCTGAACCCTACTTG
CGAGTATCAACATCACCAGCCATGTCTGAATCAGTATAACCACAAAGAGTAGGCTTCCCTGTACCAAAACACAAACTCAGACTAGAAGTGCCACAGAGAT
ATCTCATAACCCACTTCACAGCATTCCAATGTTCTCTTCCCGAATTAGAAAGAAAATGGCTAACAACTCCAACAGCGTGAGCAATATCCGGTCTTGTACA
AACCATCACATACATCAAACTACCAACAGCTGAAGCATAAGGAACTTTCTTCATATCTGCCTTCTCATCATCACTAGAAGGACACTGTTTCGTGCTCAAT
TTGAAGTGCATAGCTAAAGGTGTACTGACAACCTTAGCTTTGTCCATGCAGAATCTGCGAAGTACTTTCTGAATATACTTCTCTTGTGATAATACCAATT
TCTTGGCCTTTCTATCACGGACAATCTGCATGCCAAGAATCTGCCTTGCTGGTCCTAAGTCTTTCATAACAAAAGACTTACTCAACTCTTGCTTCAACTT
CTGAATCCTGCAAGTATTATGACCAACAAACAAGCATGTCATC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966462
Expected error %
0.680196
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 70 E Value 7e-13 Identity 9.00% Align. Length 602bp (93.62%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 317 E Value 2e-85 Identity 25.90% Align. Length 602bp (93.62%) Frame 2
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 296 E Value 5e-79 Identity 71.60% Align. Length 630bp (97.98%) Frame 1
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190G05
Clone
Clone name
hba-190g5
LE_HBa0190G05
C02HBa0190G05
P190G05
Clone type
BAC
Contamination
none
Estimated length
110,224
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found