Clone Read LE_HBa0193H01_T7_109006

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0193H01_T7_109006
Primer
T7
ID from Seq. Facility
LE_HBa_193_H01-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
11 trimmed for vector and quality, 878 raw
Sequence
>LE_HBa0193H01_T7_109006 (raw untrimmed)
GTGTCGACCTGGGTCCCGGGGGGTCGCTCTAGAGTCGACCTAGCAGGCTAGCAAGCTTNGAGTATTCTAGTAACGTCTCCTCTATATGGTGGGCGTAATC
ATGGTCATGAGCTGTGGGCTGTCTTATATGGTTATCCGCTCACAATTCCACATCTACATACTGAGCCGGAAGCATAAAGTGTAAAGCCAGGGGTGCCTAA
TGAGTG
AGCTAACTCACAATAATTGCGTTGCGCTCACTGCCCGCGTTTCCAATCGGGAAACCTGTCGTGCCTGCTGCATTAATGAATCAGTCAATGCGAA
CTAATTCTGGTGAGACGAGAGGTCTTTTTTATCTTTTTCTCTAGTGGATGGTTGGATAAATAGGTGTATATATTAATTGGAGAGTGGGGTTAGAGGTGTA
AATTAGGAAGATAAATGTGATGGGTAAATGGATTAATTAAAGTAAAAATATAAATGGGGTGGTGTAAAGTAATAGTTATTTTTTTTAAGATTAGCTAGAT
CTAATGGTGTGTTTTAAAAAACTAGTAATTGATTATTTATCGAAATATCTCTTATAAATGTAACAATATTTATGATCCAGTAGGATTTATGATTCACAAG
TAGTTCTGATACATTATATACAAATATAAGTCTTTGACGTTTATGCTCGAAGATCGTCATATGCTACGTGATTCTTCTCAATATGTGTTGGACTCTAGCT
AATGTTAAGCTTCTTATCATCTGTCGTCTGTGTGAGGAATACCTACTAGATGGTAACGCGAAGGCATTGAACTGAAAACAGACATATTACATATGTAGAT
TATATAGATTTGTTTCGTCACCCCGCCCGTCGATGAAAAAAAAAAAAAATGAAAATAAATATGTAGGATAAAGTAATG
>LE_HBa0193H01_T7_109006 (trimmed for quality and cloning vector)
AGCTAACTCAC

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.309861
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0193H01
Clone
Clone name
hba-193h1
LE_HBa0193H01
C02HBa0193H01
P193H01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found