Clone Read LE_HBa0194N16_SP6_110086

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0194N16_SP6_110086
Primer
SP6
ID from Seq. Facility
LE_HBa_194_N16-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 976 raw
Sequence
>LE_HBa0194N16_SP6_110086 (raw untrimmed)
GACCACTTCGCGGAGAAGAGATAGCAGAGAGCAGACGGCGACGGCGATGCCTCTCTTTAGAAGGGGGCACGTCATAAGAAGAGAGAGGGTGGTAGGCANA
AGATAAAGATGGAACAATGCATCATGCTATAACGAGGAGGGCCGGAATCTTCTTCCACACAGATACCACCCAGAAGCGACAAACATTGTGATCTCTTATA
GTATTTGCATGCGATGCTGAGCGATTGCAACACGAAATTCGCTGTACACGTCTCATCTACACTATAGTCAACTCTCTCATATTGCGAAGTGACTCTCGAA
CGACAGAATACAACACTAAGTACAATCCATACGGGATCCATACTGTCTCATGTTCACTGTTAGACATATCTTATAGAGATCATTCTGATTACTAGTTTCA
TATATTATAGTACTTCTACTGATTCACACTCCTGGATAGTATCGTCGTTTTTCAATGGACACTCCTTACATCTATATTACAACGAATGCTAAAGGGACGC
GGAGGTTGGTGATCGTATGTGTCTGTATTTTTCTCTCCACCCTCCCCTCGGTTCCANACTCTGCAAGCATGTAA
AAAGAAAGAGGGCGCAGGGTTGTCTG
TTGGGTCTAAACTCTTACAGATCACGCGTACGATTGGCCCTCGACCCTCCTCGTACGTATCACAGTACCACTACAACTGAGAAGTAAATCATCTCAGCGT
TCTATGCTCTGGTTTTCTAACAATAACAAGATAACGTCGTTTGTGTATCTCTTCATGATATATACATATTGAATCTTACACTTGACCACACGTGTGTAGT
AGNCTTCGTCCTCATGGTTGTCACTTAAGCGTTTACGCTTATTGTCTTCTCACTCTGGTATGTCGCCTCTTGCTGTTAGCACTGCCTCGCTGCTGNATGT
GCCGTGCTANCGTTTAGTTATACGGCTATCTTACGCATGTGTATACGAGACATCGTCGGCCATCGCTACCCACTTC
>LE_HBa0194N16_SP6_110086 (trimmed for quality and cloning vector)
AA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.31548
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0194N16
Clone
Clone name
hba-194n16
LE_HBa0194N16
C06HBa0194N16
P194N16
Clone type
BAC
Contamination
none
Estimated length
83,863
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found