Clone Read LE_HBa0198E21_SP6_111200

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0198E21_SP6_111200
Primer
SP6
ID from Seq. Facility
LE_HBa_198_E21-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1196 raw
Sequence
>LE_HBa0198E21_SP6_111200 (raw untrimmed)
CAAATAAGAATAGGAGCTTGAAGAAATAACATCATAATGTGAAGTATCTTGTACTCAGTTCACTCAACATCTACACTTACAAGAATGAATGGTCAATATA
GTATTGTCTAGGATAAATCAAGATACCCATTTTAAGGGAAATATAGCGAATGGAAAATGAAAAGTGAGGGGTAAGGCGAAGAGCCCCCTCTTAAAAGGAG
GGCAGCGTGCAAAGTGGGGGCGTAAGCGAAGTGCGTAGGTAACATAATATCAGAGAAACAGAAAAAACACAAAGGATCTGTATT
TTTTTATTAATTTGAA
TTATTTGAAGACGTTGCAACAAGATAGGACTGTGTAANNCTGACCACTACCACAACGAACACGTTTACTAAAAACAAAAAACTAAGTGTCTGTACATAAA
CGTAACGTATGATGAAGAAGGCGTTATGTGAAGTACTAACGATGCATAGATACTCATATAGTATGAGNATACGAGGACAATGGTGACGACTAATATCAAT
ATAACAACAGACTAGACTTATATATGTATGAAGTGTGGAGTCATGGAGGGTTCAACGCAGAACCCTAATGATTCCTCTTCACCGCTTGTGGTCACACTTA
ATTATTATAATACTACGTCGCATGAGTGTCGCGAAGTGATACACAAATAAATTATCACCTCATAGTTCGAAAAATGCGGGAACTAAAGAAGTAAGATCAC
AAAAATAGTCACAAAAGAATATGAATGATAATGATAATGGCAAAAACGACAAAACAGCTAGAATCAGTAAAGTCACTCCCAGACGATGCTGAACTCACGT
AGGAGCAGTCGGGACAAGTCTCCAAACCATACTCTACTACACTGGGAGCACATTATTGGGTAATATACATGAATCAAGAATGATAATAGATATACGGTCT
GCCATGAAATACCTTACATTACCTGCATATCTGAAGTAAGTTATGAATGTGAGAATACAATATCTTGAAGAAATGGATAAAGACGAGAGAATCGCAAAAC
CAAATAAAAAATAGTATGAAGGGTACGGATTCAGTCGCAGCAAGCCTCGATCAGTGACTTAGTATCTCACGGTGGTGTGAATGATAGACACGTGTGATCG
AAATGGTTTGCGCTTAGGATATCGAAATAATGGGGCAGATGCGCAGATATGCAGGTTAGGTAGGATAGTGTGGGAGGGAGAGAGCTGATGAGGAGG
>LE_HBa0198E21_SP6_111200 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.39716
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0198E21
Clone
Clone name
hba-198e21
LE_HBa0198E21
C08HBa0198E21
P198E21
Clone type
BAC
Contamination
none
Estimated length
101,361
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found