Clone Read LE_HBa0198H06_SP6_111314

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0198H06_SP6_111314
Primer
SP6
ID from Seq. Facility
LE_HBa_198_H06-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2077 raw
Sequence
>LE_HBa0198H06_SP6_111314 (raw untrimmed)
ATATGCCTAATAGGATGATTAAATATTACACTCAGCGCGCTGTGAGCATGGCTCTAGCGATGCTNGCAGGNCGTGGGCATGTGCTCGTAGTATATNNGTA
TCTCGNTGNAGTCTGTCTGTAGCATAGCACTGATAGNTGAGAGGCTGTGTTAGACAGCAGTGTANCGCNTGTAACNAGAGACGACAGTGTATAGTGGAGT
CTGTCCAACGCTCACGCTCGCATCTTTAGNGATGTATAGCNACNGCGCAGAGGGAGTGAGGGGAGCTGAGACACTGAGTGATNACGGCAGAATATAGTGN
ANTNATATGAGCAGACACCTACCTGTCTCTATGTNAGGTCTGCAGTGCTGCTGNCGCATNGNTNTCNCNGNATAGTATNACTAGCACGCCACACGTTTNA
TNTNCATACGATATANTGCNCTGCTACTGCTACCACACACTGTGCTGCANANCNTGACTNGTCACTCGCTGGAACGCAGCTGACTCACAGTCGCGTTATG
AGATTNCTGTCGCTATTCTTNACACACAACTGCCATGAGTCACCGGGTTGGCATGTANCNATGTNAGTGTGGGTGCANCTGATGAGTGTGCAGGCTGGTA
AGTTGNCTNANCACATCACTGCANACGCTTAGCACATNTNCATCCANGCTTGATGTNCGTCNGCCATAGATGACGAGTNCTAGTACAGATNGCTGTGCAC
GTGTGAGTGGCTGCTNTCCGANGTGATGNTGATGATGACGTACGAAGACTCACTCGTATATCGATTGCATNGTANCGCTGTCGTATTTTNATGGTACATG
TATATGTGCTTAGTNCAGTACCAAGAGTNTNCTAGTCGTNANCACTCTGCGGTGTTATATGCTTCTGCAATATCTGTGCTATGTGTAAACNATTACANAG
TGTNCTCGCGANTCATACTGCTNGTTAGCGCGACTANGTANAGCTGTTATGATGTGTCATGATCTGCTGTTCTGATGGGCGGCTTNTTCTNCTGCTCACG
CGNCTATCGACNTGCTGTGTTNTGACTCGNTNCTACACCNANAAGCGNACTNGTGTGCNGTGCGANCTCTTGTGTCTGCAGGAGAATCTGACTCGATCAN
GCTATGATCTGATAGNACTAAGAAGATATGGNANANACGCTNAGCNTNTGTAGTATAGCATCGCGATCGTGTCTATCGCGCGATATGTNGTCGTTGATNT
ACTCTCGATGAATTATGCGATGATGTGATCTTGTGACTGTGTGCATCTNTCACTGCNTNACTATNGNNGANTCGACTGTCTAATACAGTNTCGCTAGCTA
CTTATTGGTNCGTGTGCATGCGACACTGAGCTNACNTGACANTNTGANTAATATNTGATGTGNTNTGGCTCATNTNCATAGTATGCACAGTGANTGAGTN
ANTNCTGAGCGTAGTAGTGTTCACTGCNGN
ACANGNGTGANCNCGTAGCNAGACGACACGGGATACGTGAACGAGAGACTCGTGTGCATGCGAGTGGATG
CAGCATGAAAGATGTNCGCTGATACTGATGCTNCNAGATATGACTGTGACATGCCGAACTAGCTACGTTACGATACTCACACTATGTCTTNCATCTANCA
TNTATATACTATNTGAGCTACATGCTAANCACTNACAGATNTAATATNGACTGACACCAATACAGATAACACAACATCATCTCACGTGNANTACGACTGA
TGCATCGTACGCTNGNCGACATATGGCAAGTTAGTNTACTTGANGTTGCATACTACACTATCATGCCATACTGATTACGACTGTGACACACAACTTATGC
GCGCTAACNGCTACTAGTGTTCCNGCAGCGCGCGCGNCGCGTTGAGCGCTGCTGATGANGACTATGGATTTGCGACTATNCATCATATATNCACTNTGGN
GCACATNCTGCANTACATGAAACGCTGTGACTGCGCTCTCTCCTGCGCCANTGTGCAGANCTAGACATGCTGATGGNACTACTAAGAGCATTCCCGCTGA
CTAGTNACTTTNCTATCGAGCGGATCACANATTACACTGTAGGAGAATCTCTTGCGCAGCNGAACACGAACGCGCAN
>LE_HBa0198H06_SP6_111314 (trimmed for quality and cloning vector)
AC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
25.31
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0198H06
Clone
Clone name
hba-198h6
LE_HBa0198H06
C02HBa0198H06
P198H06
Clone type
BAC
Contamination
none
Estimated length
90,857
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found