Clone Read LE_HBa0198L24_T7_111543

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0198L24_T7_111543
Primer
T7
ID from Seq. Facility
LE_HBa_198_L24-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
957 trimmed for vector and quality, 1005 raw
Sequence
>LE_HBa0198L24_T7_111543 (raw untrimmed)
GTCGACCTGGGTCCCGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAAAAGGGCTTTGTTGAAATTTCTAAGAAAATTAGAATTTAAAGATAA
CTTCATTTTTAACACAATATTTTTTTTTGATGGGATATGAGTATGTATATCGATTTTTTTTCATGTGTGAATTTTATTAAGGAACTATTTTGAATCGTTT
ACAGAAGGTAGTTCATTTAAATATGACTCTAGAATCTAACAAAAATCAAGTCATCTAAGAATAAAATGAAAACATGAACTACAAATAGTATTAGATAAAG
AAAACAAAGATGGTGAATAGCAAGTACTTACGCCTTGCTAACTCATTGATTTGATTTTGTAAAAATCTATGGAGATGATTCAAGGTGAAAATGAATTTTG
TCATCTCCAAAGACGTTCTACTCTTCAGTTATTTGAGATCTCTTTATTATAGTCTTTTGCTCACTGAAGATTTTTATTATTTTTTCTTTTTTTCGTTTTT
TAATTTTTTTTTTTTTTTTTAATACTTTTTTTTTATTTTTTTTTTTTTTTCTTTTATTTTTTTTTATTTTTTTTTTTTTATCTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTT
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTATTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTTTTTTTTTTTTATTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTAT
TTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTCTTATTTTTATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTATTCCCCCCTTTTCT
TTTTT
>LE_HBa0198L24_T7_111543 (trimmed for quality and cloning vector)
AGCTTAAAAGGGCTTTGTTGAAATTTCTAAGAAAATTAGAATTTAAAGATAACTTCATTTTTAACACAATATTTTTTTTTGATGGGATATGAGTATGTAT
ATCGATTTTTTTTCATGTGTGAATTTTATTAAGGAACTATTTTGAATCGTTTACAGAAGGTAGTTCATTTAAATATGACTCTAGAATCTAACAAAAATCA
AGTCATCTAAGAATAAAATGAAAACATGAACTACAAATAGTATTAGATAAAGAAAACAAAGATGGTGAATAGCAAGTACTTACGCCTTGCTAACTCATTG
ATTTGATTTTGTAAAAATCTATGGAGATGATTCAAGGTGAAAATGAATTTTGTCATCTCCAAAGACGTTCTACTCTTCAGTTATTTGAGATCTCTTTATT
ATAGTCTTTTGCTCACTGAAGATTTTTATTATTTTTTCTTTTTTTCGTTTTTTAATTTTTTTTTTTTTTTTTAATACTTTTTTTTTATTTTTTTTTTTTT
TTCTTTTATTTTTTTTTATTTTTTTTTTTTTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTGTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT
TCATTTTTTTTTTTTTTATTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTATTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTCTTATTTTTATTATT
TTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTATTCCCCCCTTTTCTTTTTT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.657064
Expected error %
4.31886
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0198L24
Clone
Clone name
hba-198l24
LE_HBa0198L24
C04HBa0198L24
P198L24
Clone type
BAC
Contamination
none
Estimated length
152,895
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found