Clone Read LE_HBa0131C07_SP6_111835

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0131C07_SP6_111835
Primer
SP6
ID from Seq. Facility
LE_HBa_131_C07-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
34 trimmed for vector and quality, 974 raw
Sequence
>LE_HBa0131C07_SP6_111835 (raw untrimmed)
TTCCCGAGTTTTCTCAGGAAAAAAATGTCATTCTTGTGATCTGTAATTATGTACACATAACAAATTTAGAATCACCCATAAAGGGAANNAANNAANNNNN
NNNNNNAAAAAAAANGACCTTTTAGGGACAAAANAAANNCCAGNGNCANNGAGAANNCCAGCNCCACCAGAAGCANAANNCACCCCNNNCAAAACGGCAG
CAGCAGNGGGAGCAAAAGAAAGANACGGAGGGGGGGAANGAACCCCAAGCNNCGCAGCNGAAAGNGGAAGAGGAAAAANANANANANGNNAAAAACAACG
CANNNNNNAAGNANCCGAAAGAANANCNCCAGAGCNNCGNANCNGGAGCGNGAACAANNNAGAANNNGGAGACACCAACANCGGGNGAGACGGGNCCAGC
NCNGAAACCAAGAGAAACCAGGACAGAGCCCGAACACACACCCCAAAAGCGAGCGCAAAGGAAGGAGGAAGGCCCAAGCCCCACAAGGAGACCACCNGNC
GCAAAACCACCGACGAGGGACCAGAGACACACGAGAACACCAAAGAAGCCAAACAAAAACGGCAGNCGAAAAGCCCNACGNCGAAAGGAACCGCACNACG
AAACACGAAGGGCAGAGACCCAACAAACCCGAAAGGACGCAGCAAAGAACACACGCACAGAACAGGAAGAAGGAGAACCAGGAAAGGGGAGAGAACAACA
GGAACCGAGAAGAAACGGCACCAGAGACCACAGCAAAGGGGAGGCCACGAGAAACAGGAAAAAACACAAAAAGCGAAGGAGACCCCGACGGAGGCGCGAA
AACAACGAGCAAAAGACACAAAAAAAAAAAGGCAAACGGCAGAGGGGCGCCGGACGCAGCCCGAGANGCGACGCAGACAACAGCCGGAGCCGAAGCAACC
GACGCAACAGCAACCCGCCCAACCGCACCAACCAAACACGGGGCAGGAGGCGGAGCGACCGACCCGCGCCACCC
>LE_HBa0131C07_SP6_111835 (trimmed for quality and cloning vector)
GATCTGTAATTATGTACACATAACAAATTTAGAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.786572
Expected error %
0.3619
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0131C07
Clone
Clone name
hba-131c7
LE_HBa0131C07
P131C07
Clone type
BAC
Contamination
none
Estimated length
91,484
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found