Clone Read LE_HBa0181I18_SP6_112922

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0181I18_SP6_112922
Primer
SP6
ID from Seq. Facility
LE_HBa_181_I18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1385 raw
Sequence
>LE_HBa0181I18_SP6_112922 (raw untrimmed)
CAAGGCGTGTTATAGGCAGTGTCGAACTGCGCCGCACTCCATAATCAGANAGCGAGAGGAGCAGGCTAGCACTATCTCACTGTGCACACTAACAGCAGAN
AGTAANAACACATACATAAATTAGGTATNCGCTACACATACACCCCTGATAGAGACAAGAGGAGTGATTCGATGTGTGACTGCGCTGTGACGCGGATATC
TGTCGCTGCTGCTTCGCTACACTTNTCTGCGTATACGTGTTATGTCCGTACGATACTNGNGTCTNGCTCTAACACNGAGACGTATGACACGCGTGCACAC
CCTNCGAGTCGACGCCTCTGCTGAGCCTGTTGACATAGTACGACATGATTNCACTCGAGATATGACCCTATGATAGTATGTGCCGGAGGTGTGCTTCNTA
CTCGTCACTAGGAGTCGTTGTACTTTATTGANCGTCACGTGTGAGCGCTCGACNGCGCTTCTCGATCCGCATGTCTGCCGATCTATTTNCGCATACNGCG
TNTCTAGTGGTCTACTATCTTGTTNGTCATGANGCTTATATCTATATTTACTCATTGTTCTCTCTNTAGTACTCTATTTGTGTTTGTTTATTGCTGTAGT
CAGAGCTATATATTATTGNGCGAGCCCTCGTGTGCTGGTACACGATCTCATTACATNGTGTACGCTCTGCTCGAACTGACACAGCGAAGAGACGCTATTN
TGTCNACACAACTGACGCGTATCACTTCGCCNCTGGTCCGTNGCTGATAGCGGTAAGGAGTCGTGCGTGGTGATTGTCGGCTCTATAGTTGTCNGTCTGA
TGTACATCTACTGATTGTATGTGCTGCGATGAATAGTAGCGCATCTGCACACGAGCGCATTTNGNCCATGATGTCANTGTATGATTTCGTTCCTAGCCGG
CGCGCGANTGTNNTATATGATGTGNTGTNGTGGGATNGTAGTGATATTGTTANGTTGTTATGTTATATAGCGAGTCNTAATATTANTNGGCTNATANATG
ATATGTTTTATGNGNTATTGTGTNTGTGGACNACTATCTNGTNATATATATTAGANGTATAGTGATTATTNTAGTNAGTGTGTATGTTTATGTGTAAGAT
ATANAGCCAATACTCGCATCGGTCTCTCTTCTCAGNCTGCGCGTCTGTGATCGTGTACCTCTACCTCCGACCTCGCGTCTTACTGNCATGCNTGNATGCT
TGNGACGTGCNTTACTATCTCAGCCNCTGCGCCTGTGTCATAGACTCGCTTTCTACTGACTGCTGATACTATTATCATGTGTGTACTACAGCAGTCGCAT
GACATNTGCATCTATCAACTACTACAGTCATCACNTGTACTGCAGNAGCGCNGATCAATGCTGATGATATCTCAGTTATGTGTAT
>LE_HBa0181I18_SP6_112922 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0181I18
Clone
Clone name
hba-181i18
LE_HBa0181I18
P181I18
Clone type
BAC
Contamination
none
Estimated length
67,951
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found