Clone Read LE_HBa0188A19_SP6_113308

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188A19_SP6_113308
Primer
SP6
ID from Seq. Facility
LE_HBa_188_A19-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1086 raw
Sequence
>LE_HBa0188A19_SP6_113308 (raw untrimmed)
TTTATTAGTTTCTTGTTTTATTCCTTGTTTTTTATATATAGAGAAAATGTAATTGTTTTTGTATGATATAGGTAAATACTAAGATACCCTCCCCCTTTAA
GTCGTCAGTGTATGATTTAAACATGAATATTTCGTCCGTATGCCCTTATAGAATATCCTAATTGATAGAACTTTTTACTATTCTAAATAGTCAACTACCA
CATCTCTTTCACTGGTTATGTTTTCTGTTACTTTCTTCTATTAGTTAATCTTTCTTCTTTGTCTCTTACCTATACCTATTGTAAACATCAATATAAGATG
CATGATAAATAGAAAGTTTACTTTCCGTCTATTAGTTGCTGCCTATTCGAGGTGTTTTATCACTTGTCCTATGTTTGCTGTTTGTGATATAATTCAATTA
TTATGTATAACTGAATTGCGTGGGCTTATTCGTTAGAGGAGGGGTGGGAGATGGTGGGTGCGTGGTTTGATTTTAACGAGTGTATGGTGGGTTGCTAGGT
CTTCTATGTTTTTTTGTTTTGTGTGTTTGCTTGTTCTCGATTTATTGTTTTTTCTACTGGGTACCATTACTAACTTGTAAGTTTTCTATTAGTTTAATGT
AATTTATATGCCATGAGAGCTACGATTTCTTGATAGTTTCTCTCTCTTGCGTCTAAAGATGATTTGTTACAGTCCTTGATCTATTTAACATGTTATATTT
TTTCTTTACTCTTTATCTTGCAGATAATGTGATATTATCTTTAATATTATTTTATATGGCATTTGACTAATGTATTATTCATAATCTGCTATAAATGTTG
TGTGGTTTAGTATGTATTAGTTTATGTAGTTGTGATTTTGTGGTGTGAATTGTTTTTTTGGCTTTTTATATATATATCCTGCGGTGTATTGATTGCACCA
ATGAGCTACGCAGTTAAGCTATGTGATAACTTTCTTTCTCGCGCCTGCTGATTTTTCTCCAGGATTCTATACGGAATACTTCGATGTATACTACCGTGTC
GAATGTAGATCGTGTTAATGCGCTGTCTCAAACATTACTTGAGTAGTACTAGCACTTCTATGCTCATCCCTACCGATGTCTGTAGT
>LE_HBa0188A19_SP6_113308 (trimmed for quality and cloning vector)
GTAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.8415
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188A19
Clone
Clone name
hba-188a19
LE_HBa0188A19
P188A19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found