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Clone Read LE_HBa0188B22_SP6_113362

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188B22_SP6_113362
Primer
SP6
ID from Seq. Facility
LE_HBa_188_B22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1168 raw
Sequence
>LE_HBa0188B22_SP6_113362 (raw untrimmed)
ATAAGAGCATCCCACGGCTGTNCACAGGATCTACTTGTGAGAAGATAGAGTAGGGGGCGACAAAAAACACGGAGAGAAAGAAAGACCACGAGACCGGCGG
ACAGCACAATAGAGGACGCCGCCACCCGTTTTGCAGGAGTAGAAAAACACATACATAGAACGCAACCAATTAACAACGGCACTCCCCTTTCAACGCAGCA
CTCANGAAAGTTGTAGGGGGGGGCCACCACAATATATGAATTCTAACACGCGTGAGCAGCATACCCTGCCAGTACTGAAACTGTAAATGAACCCTATAAT
TGAACAAGAGAAACACTAACAATGAAAAAAAATCATGCCTACACACGCACCCATATGAAGCAACCGCCCTGCAGTGCACAGCACAGCAAACACCGAGCCA
CGCGAACACAACGGATGGACCGCGCCACACAATCCCACACTCCCTCTCTCCATACGAGTAATCGCTGTCCTAACGTACGCGAACCCATGCGACTAAGACC
CCCGGCTGATCGGCAGACACGCAGAACGCACAACTAAGACGCTCCTTTTGCAACGAACAAGACAACAAAGACCAGAATACAAGACCCCAGAGCGTACACA
AGCAAAACACTAGCCTCAGGCCTATATAAATCTCATGAAAATCAAAGACGACACAAGCAACATGAAAAAGAAAACTACTGACTCATCGCAATGAATCTCA
ACAAATCAACCGGCAAGACGACAGAACGCATACTCTAGCGGACCTGCTGGCTCCCCACCAGAGGAGATGAAACGTCGATTCACGCGCCGCGCCACACCCC
AACGACCCCAAGCCACAGAGACAACACAAAAGAATCACAACTACAGCCCAATGAGTAGAGAGGTCGCGACTCCTGAGCCTAACCCCCGACACCTGCGTGG
GCCAAACAGACGCGAACACAAGATACAAAGAAATAATACGCAAGAGACCAAACTAGACGACAGCACGAGCTATGCATGATGTAAACTGTCTGTAACTGGT
TGATCACCGCATGGCACAAGTGTCGATGCACACCAAACGACCCAACCCCACACAAACGCGACACACCCAGCAACACCGACCTACAACAACGAACCACCGT
CCGAGCACCCGGACCAATGCGCGACCAAACAACAAACTACGCGACAAATCCTAGCCAACACGCACACT
>LE_HBa0188B22_SP6_113362 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.1079
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188B22
Clone
Clone name
hba-188b22
LE_HBa0188B22
C12HBa0188B22
P188B22
Clone type
BAC
Contamination
none
Estimated length
110,707
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found