Clone Read LE_HBa0188N10_SP6_113914

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188N10_SP6_113914
Primer
SP6
ID from Seq. Facility
LE_HBa_188_N10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1181 raw
Sequence
>LE_HBa0188N10_SP6_113914 (raw untrimmed)
CGCGGTGTTTCTGACCCCCGCAACAGTAANCTTAACTCTTAACAGCTCCATGGAGACTACCTCACTCTTTACTTATGTGGTATTGATAGGCACACAGAAG
TGTTAGGCAACCCGTATAGCATGTCATTCTCAAGAGAATTCTGCTATCATTATCATGCGTAAATAGCGTGCTCCTTGTCAGCTCTACTCAAATTATAGTA
TTATGTATGAGCTGCTCACCACACATCTGTGACTTGAATAAATAGACTATACGGAGCAAGACCTAATCGTGGTCTCCATGTGGGCGTCTCGTACACACTT
AGCACATAGCATTCTCGATCATCTCCTGATAACAACTCTCCTCTAGTGTCCTCTCTATCTGCCGTGCCTATTCAAGCAGCGTTGCGTTCTATCAGTCTTG
CTATCTAACTCTATGAGTGGTCACGTGTACCTCACATCTCTTAAGGATTTAGGTCCTTCTCATATTCTATTCTGTTTTTCTCGTAAATAAATGTCGTTTT
TCACTAATAACTCGCTAACGTTATCTCTCCTCGTTGTTACTCCTCATTTCATCGAGTTCGCATCATATGATTTTCATCCATCATCATCTTATCAGACTCT
CTGATAAATTGATGTTTACAGTTCCCAC
TAGTCGTGTCACTAATGCCTTATATCTGGTCGGTAACGAACACCCACATGTATGTCTTATGCTCTCATAGCC
TTCTATACCACTTGTAGCTCCATGTGAGCTCTACTGTTATCACAATGTCAAATTTTCCAATTACTTCTTTTACTCATCTATATCTCACAACTTCTTTTTA
ATCATTAATGTATATATCTTTTATATACTTACATTTTTGTACTATTCTCGTTCGCTCTTTTGACACTTTGTTCCGTTATTCAACCTTTGATTCTCGCTGC
CTTGTGACTTCTTGTACTCTTCCTGACTTCCACTAGTGTTTCTCGCATGCAATTGTTCATATTAATACTTATTTATCTATTTTTCTATGTGCTTCCATAG
TCTCGTCAAAATATTCTACAGTTATCTATACTGTCACAATCTCCTCATCGTATCAAGATTATTTATGGTTATGTTTTGCTTTCTGCCTCTCATTATATTT
TTAGTTTATTATTTCAATTAATTATGTGTACTCTTTGAACTAATGTTGCTCTAGTTTTGTGCTTATCCGACTTTCGTTCTT
>LE_HBa0188N10_SP6_113914 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.4054
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188N10
Clone
Clone name
hba-188n10
LE_HBa0188N10
P188N10
Clone type
BAC
Contamination
none
Estimated length
110,467
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found