Clone Read LE_HBa0191N08_T7_114679

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0191N08_T7_114679
Primer
T7
ID from Seq. Facility
LE_HBa_191_N08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
706 trimmed for vector and quality, 936 raw
Sequence
>LE_HBa0191N08_T7_114679 (raw untrimmed)
TTAGCTCGGTCCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCTTCAGTGGGATTGATTCCTATAAAGAGAACNANAANANAANGANA
ANNGGANNNNGTCTTTTAGGGTTGTTAGATGAAGNTAAAGATATGNTTAGAAAAATGGAGGGGGATAATTGTNTTNTAAANAATGTCCCTTAGAATGTTA
TTGTGNAAGGGTATATTAGGTGTAGGAAAATAAATGAAATGGTAATTTTTATGAATGAAATGAGTGGGAGGGGNTTTTTATTTGATGTAATTATAGTTAA
GTTATTGGTAAAGGAAATAAGTGAGAATATTTTTTATTTTGAGATGATATTAAAGTTTTATATGGAAAAGAAGTAAAAATTGTTATAGTTTGGTTTTTTT
GGNTATTTTTTTTTTTTTGATANAGTTTTGTTTATNAGTTTATATGAAATTGAATTTAATGTAATTGTGGAAGATGAAATATGGTAATGAAAATGTTGTT
TTGTTTTTTATGTTGGTTTATTGAGGAGGTATATNATTGTTGATGTTTTGATTGTTTTTTTATAAAAGGGGGGTTTGGAAATTAGATATTAATGTTNTTT
TGATATGAGAAATAGTGTTGAGTTATTTTTATGTGTATATATTATAATGTTTTAGTAATATTATATTTTTTTGTTATTTTTTTTTTTTATTTTATTGTTT
TTTTTTTTTTTATTTTATTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTGGGATTAAATTTATGATTTAATTATATTTATAGG
GGGTTTTTTTTTTTTTTTTTTAAATATGGATGAAGTTGAGTTTGTTTTTTTTTTTTTTTGAAAGAGATTAAAGGTTATTTATTTTTGATTTTTTTTTTTT
TTTTATTATTTGAAAGTTTAGGTTGTTTTTGGAATG
>LE_HBa0191N08_T7_114679 (trimmed for quality and cloning vector)
AGCTTTCTTCAGTGGGATTGATTCCTATAAAGAGAACNANAANANAANGANAANNGGANNNNGTCTTTTAGGGTTGTTAGATGAAGNTAAAGATATGNTT
AGAAAAATGGAGGGGGATAATTGTNTTNTAAANAATGTCCCTTAGAATGTTATTGTGNAAGGGTATATTAGGTGTAGGAAAATAAATGAAATGGTAATTT
TTATGAATGAAATGAGTGGGAGGGGNTTTTTATTTGATGTAATTATAGTTAAGTTATTGGTAAAGGAAATAAGTGAGAATATTTTTTATTTTGAGATGAT
ATTAAAGTTTTATATGGAAAAGAAGTAAAAATTGTTATAGTTTGGTTTTTTTGGNTATTTTTTTTTTTTTGATANAGTTTTGTTTATNAGTTTATATGAA
ATTGAATTTAATGTAATTGTGGAAGATGAAATATGGTAATGAAAATGTTGTTTTGTTTTTTATGTTGGTTTATTGAGGAGGTATATNATTGTTGATGTTT
TGATTGTTTTTTTATAAAAGGGGGGTTTGGAAATTAGATATTAATGTTNTTTTGATATGAGAAATAGTGTTGAGTTATTTTTATGTGTATATATTATAAT
GTTTTAGTAATATTATATTTTTTTGTTATTTTTTTTTTTTATTTTATTGTTTTTTTTTTTTTTATTTTATTTTATTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.847353
Expected error %
10.1061
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM52341.1| Score 75 E Value 2e-12 Identity 14.50% Align. Length 254bp (35.98%) Frame 3
fertility restorer-like protein [Petunia x hybrida]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM52339.1| Score 73 E Value 8e-12 Identity 14.50% Align. Length 254bp (35.98%) Frame 3
fertility restorer [Petunia x hybrida]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0191N08
Clone
Clone name
hba-191n8
LE_HBa0191N08
C06HBa0191N08
P191N08
Clone type
BAC
Contamination
none
Estimated length
86,281
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found