Clone Read LE_HBa0051N01_T7_11761

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0051N01_T7_11761
Primer
T7
ID from Seq. Facility
LE_HBa_051_N01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
630 trimmed for vector and quality, 824 raw
Genbank Accession
DU030602
Sequence
>LE_HBa0051N01_T7_11761 (raw untrimmed)
ATGTTTTAATATCTTTTTTTTGTTATAGGGTTTGCGGGGTATCATAAGCGTTGAATAAATCAACGTCATGATGCAAAGATTGACCGGGATAGTCTAATTA
TATCGTAAGATAATTAGTATAGCTATTATCGAATCGTTTTTTTAGAGAACCACTACGAAATTTCTATACATCTCGATCTAGAATTAGTTTCATTATTTAA
TTTTAATGATTGAATTCATCAAGTTTATATCTTGAGTTCACCTCATTTTTTCCACCATTAGTATAGTTAGTGAATATATGCCCATGCGAACAAACAATCA
AAGATTTTTATTCTTTCTTCTCTTTTCTTTTCTTTTTAATCGAATTTTTTATATTAAATTTATATCTTGAATTCGTTTCTATGACATAGGGCTTCAAAGA
TGTGGGAAAAGTTGTAGATTGAGGTGGATAAATTATCTAAGACCAGATTTGAAACGTGGGAGTTTCTCCCCTCAAGAAGCAGCACTTATCATTGAGCTCC
ATGGAATTCTTGGTAACAGGTAAATAATATATACAGTGTAATTTTTCGATAAAAAAATTTTTGGTTAAAGAATATCTTTTAAAAGAATATTTTTTGATGA
AGAGAACCATTCCGGTATTATTTTCATGCAAAAGAGACATTTTGTTTTGTTTTTCCGATGGGCGCAAATAGCGAAGCATTTACCCGGAAGAACAGACAAT
GGAGTAAAGAATTTTTGGAATTCGAGTATCAAGAGGAAGCTCCACCTTTCTCTGGAATCCCCCCGGATAACCCCTCCATCATTCCTACCTTTAACAATCT
CTCCCCAATCCAATCCCCAATCCT
>LE_HBa0051N01_T7_11761 (trimmed for quality and cloning vector)
TGAATAAATCAACGTCATGATGCAAAGATTGACCGGGATAGTCTAATTATATCGTAAGATAATTAGTATAGCTATTATCGAATCGTTTTTTTAGAGAACC
ACTACGAAATTTCTATACATCTCGATCTAGAATTAGTTTCATTATTTAATTTTAATGATTGAATTCATCAAGTTTATATCTTGAGTTCACCTCATTTTTT
CCACCATTAGTATAGTTAGTGAATATATGCCCATGCGAACAAACAATCAAAGATTTTTATTCTTTCTTCTCTTTTCTTTTCTTTTTAATCGAATTTTTTA
TATTAAATTTATATCTTGAATTCGTTTCTATGACATAGGGCTTCAAAGATGTGGGAAAAGTTGTAGATTGAGGTGGATAAATTATCTAAGACCAGATTTG
AAACGTGGGAGTTTCTCCCCTCAAGAAGCAGCACTTATCATTGAGCTCCATGGAATTCTTGGTAACAGGTAAATAATATATACAGTGTAATTTTTCGATA
AAAAAATTTTTGGTTAAAGAATATCTTTTAAAAGAATATTTTTTGATGAAGAGAACCATTCCGGTATTATTTTCATGCAAAAGAGACATTTTGTTTTGTT
TTTCCGATGGGCGCAAATAGCGAAGCATTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.925517
Expected error %
0.321471
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g13890.1 Score 91 E Value 5e-19 Identity 32.60% Align. Length 128bp (20.32%) Frame 3
68416.m01755 myb family transcription factor (MYB26) similar to myb-related transcription factor GI:1167486 from [Lycopersicon esculentum]; contains myb DNA binding domain: PF0049
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g09540.1 Score 86 E Value 2e-17 Identity 28.00% Align. Length 131bp (20.79%) Frame 3
68414.m01070 myb family transcription factor (MYB61) contains PFAM profile: myb DNA-binding domain PF00249
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB02319.1| Score 93 E Value 5e-18 Identity 32.60% Align. Length 131bp (20.79%) Frame 3
transcription factor-like protein [Arabidopsis thaliana] gb|AAS10058.1| MYB transcription factor [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS92347.1| Score 93 E Value 5e-18 Identity 32.60% Align. Length 131bp (20.79%) Frame 3
MYB9 [Gossypium hirsutum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0051N01
Clone
Clone name
hba-51n1
LE_HBa0051N01
P051N01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found