Clone Read LE_HBa0107D15_T7_121805

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0107D15_T7_121805
Primer
T7
ID from Seq. Facility
LE_HBa_107_D15-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1480 raw
Sequence
>LE_HBa0107D15_T7_121805 (raw untrimmed)
GGCGAGCGTGACACTCTCGAGGTGGGTGGGAGATGCCCTCTCTTATATNTCGTTGTATGATCTCTAGCCTCAGTGTCATGTGTCTAATGTCGTGATTGCT
CTAGTTCNTGTTCTCATGTATCGGTATGTTGCTTGCACTCATGTAAGAGAGTACGGTGTCGACGCATATAGTGCGTGGAGGTGGTGTATGTATCCATCAT
GCGTNTGTTTCGCAAGCGCACGTTATGAGCAGTACATATATGTGCTAGAAGTATCTGCTGCATAGATGATATCAGCACCGCTGTCAGTCAACATGACTNT
GTCNATTTGTAACGCATAACACTTGNANTGTGTGTACGGGAGTAGACTATCGCTATGTATGGATGAAGACTAGACTACTGCGTCCCTAAGTACGTGCCTC
TAGTCCGAGCCTAACGTATGAACTTGAGATGTCGATGCATGCATAGTCTTGTGGCTTTGGTATGGTTGCGNTGCGTGTTGTTCGTGAGTAGTCTATCGTG
TAGCTCTGGGTAACTTTCGCCTACTATGACGTGAGATGACATTTTATGGATGACTTATAGATGTCTTATGGTTTATAATGCCACACGATTGGGTACNTGC
TATTTGGAACCTGAGATATTAGCTCTGTAAGATCATCATTTTGTGGTGGTTCTAGTGT
TCTTCGTTGTGCAATGTGTGTGGGATTCTCTTAGAGTGAATA
TAGTACGATGGTATGTTCGGTATGAGTTGTAGATATTGCTTGGCTACCTGCTTTGATTGCATTGTCGCTTGTCTCGCTACTAATATGTACATGGGGTTGT
TGGATTGTTATTTGCTGTTACACACATTCACACTTAGTACTTTGTTGTGATCTGTCTATATTGTTATCCNGCGGTTGTTCTGTCTAACTTTATCCAATTA
GTTGCCGGCTCNTCTTTAGCGTGCAACTACTCTATCGTAACCTTAGTCCTTTGCTTGNGCGCGTATTACTGAAATGTCTAATGTCTGTTCTACTCATATG
ATACTGTACGAATTTGTTCTGTACTCTCGTTGTCTTTCTGATATACCTTGATGGTTTGTATTCTTTCTTTCTATTACTGTAGGCTTTCTACTTGTGAGTA
ATGTCTGGCTGCTCATGCTGTGTTGCGATGTGNTGTGAATGNCGGGCTATACGTNCTAGTTGTTTTCGATTTAGAGGTGACTGTTATGTGTGTTATGGTA
TGTGTTGTGATTTGTATTGTTTATGATCTATAATGTCTACGTTGTGTCTCATGTTTCACTCGCGATGTTGCTGTACATACTTGTTTAACTTTGTGCGTGT
ATGGTGTCGTGTCGGCGTATGTCGCGCTGATGCTGTCTTTGCTTGTTCGTGTCAGCGATGTGCGTGTTCGTACTGTCTCTATCTCGGGCTGCTCTCTCAT
AATCTTATGTGNTTTCTCTTTGGTGCCTTGCTCATGTTGTGTTCTATCCTTTCTGCATTCTCGTTTGTAGCTGTCTCTTT
>LE_HBa0107D15_T7_121805 (trimmed for quality and cloning vector)
TC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.043
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0107D15
Clone
Clone name
hba-107d15
LE_HBa0107D15
C09HBa0107D15
P107D15
Clone type
BAC
Contamination
none
Estimated length
132,154
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found