Clone Read LE_HBa0176J23_SP6_124645

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176J23_SP6_124645
Primer
SP6
ID from Seq. Facility
LE_HBa_176_J23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 960 raw
Sequence
>LE_HBa0176J23_SP6_124645 (raw untrimmed)
TATGTTCGGCTCATGGCTGTGTCGGTGGTCTACCCCCCTCCCTGAGAAGACCTCTGCGATTTTACAGTGGANGCTTGCCAACATGCCTGCTCCATCATTC
CTGTATACTAAAATATTGTATCAACCACAACAGTAAAGCAAAGTATGAAATATGGTCTGTCGTGTACGAGAAAAAGACA
AAAGATGTTGTCCGGCAAGTC
GGACTATGGCTATGAAATGCGGACCACAGAGCGCAATCATGTGCTCTCTGGATCACATCTCAACCCAACCAATGCTGTGCGGCGCGCCCACAGTTATCAT
CCGTAGTATCTTACGTCTTCATAGTGCTAGTTTGAAACCGTGTTGCTTCACCTACTTGCGTCTTCTCCTAATCTGAGGCTTGCTCTACAATTAAGCTCTG
GTGCGAAAACGTTGTTGACTTCGCTTGTGTTGTGGGCATATGGTCGGAGCGGGTTTGTATTGCTAACATATGACAACTTCATATACATCTGCTGTCTATA
GACCATGTATGCCAGAATATGAGCTTCTCATTTTCGCGTCGTCTGGGTTGATGCTATTGACTGCTTGGTGTGCATGTGCTTTTGTTCTACTGTCGATGCA
CTTGCATGTGCGGCGTCTGTCGGAGTCAATGATTTCGTGGTTATGATGATCGTCGTCTGNTGCGCTATGTTGGCCGGCCTTCTNTGCGTGCATATTTCTG
TGGTTGATGTGGTGTGCTGGGTGAGAGTGGGTATGGTGGGAAGCTGTCGTGTGGAACTGCTGTTTTGTTCTCCGATATCTTGTTGCTAGTTGCTCATATT
CTGCGCTCGGNTTATGTTTTCTTTAGTCGTTTTATCGAGTGTATTAGTGGTNGTGGACGTATGGGGCGCTCGAACGTGTATTCGAGTATTGGTTAGCCGA
TTACGCGTGGTATGTGTGATTGATTGTTCGGATGTGCTTGTGGCTAGCAGGTGCACCTNC
>LE_HBa0176J23_SP6_124645 (trimmed for quality and cloning vector)
AAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.9109
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176J23
Clone
Clone name
hba-176j23
LE_HBa0176J23
P176J23
Clone type
BAC
Contamination
none
Estimated length
121,869
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found