Clone Read LE_HBa0176K10_SP6_124656

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176K10_SP6_124656
Primer
SP6
ID from Seq. Facility
LE_HBa_176_K10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 849 raw
Sequence
>LE_HBa0176K10_SP6_124656 (raw untrimmed)
CGTAGGCTATGCCGTAACTTGTTCCTTCCTCTACACTACAGCACCCCCGCTAGTACACTTCAATACCATGGACACATAAGAGGGACATATTCTTGTCCAT
AGCATTCTTGTCGGTGGTATGTCCGATCA
CGACCCTCCGATATATATCTACTCTTCTCGGGCGCGCGATCCTTTCCCTCTAAATATCGATATCGCACCTG
CCGGCGACGCGATAGAGTCCCTACGAACTAGGTCTATCCTGCGTAACCATCAACAATGTACGGACTTACAATCGCAAACTGACTTTGTGCAGAGGTAGAT
TTACGGAGAGAACCATTATAGATGCATAAGGTCGATTTTACAACCAAGGATGGCTACTTCCTTCCTCTTAACTATTAGTCTATCATATTATTATGCAATA
GCGTGCAAAGGAATGACACGAATTAGCGATCGTTTTTATAATCTCCCCCCCTCTCCACGGGTGCATGCTCTCAAAAGAAAAGGGTGGGATGTTGTCCAGC
TTATCTTAGTGCTATCAACTTCACCAATCTACTCATGTATAATTATCTTCAAACTTATCGTGGCATTTATCCTGACGTATCTTTTACTTATTTGGCCTTT
CGGTGCGTATCATTATATTCTCGTCTGCCTTTTTTGCTTCATTTTTCTCTCCTTCTTCTCCACTTCCACCTGCCTTCGTTGCTATTTGTCATCCTCGCTT
GTGTTACACCCTGCTCACTTCTGTGTTTTTGCCAATTCGGTTCTTTTGTGGTGATATGGTCTGATAAAGTATCCGATGTATAATGGTTCTGCTGTCTGTC
TCGATTAGAACGATGGTGTTCTAATCATTGCGCATGTCAGGTGATGTCT
>LE_HBa0176K10_SP6_124656 (trimmed for quality and cloning vector)
CGAC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.5253
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176K10
Clone
Clone name
hba-176k10
LE_HBa0176K10
P176K10
Clone type
BAC
Contamination
none
Estimated length
52,122
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found