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Clone Read LE_HBa0178I09_SP6_124991

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0178I09_SP6_124991
Primer
SP6
ID from Seq. Facility
LE_HBa_178_I09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1071 raw
Sequence
>LE_HBa0178I09_SP6_124991 (raw untrimmed)
CATGTATCTTTATGATCGTCGGATACGTGATCTAGTGATCCAGACCTCACACACACCTGTAATAAAATGATAGAACCCTCATCTCTTCTTCACTTGTACG
ATGACGAGATTCTAGAACAGAGTAAAGAGAGTAAACGCAATACGTTTCGTGCACATATATCTTCCTTGAGCTAACACTTTCCACTGGCGACTGATTACAT
ACTATTCAACAATCTCAGCAATTATATAGCATGTAACTATACGAATACAATATGTAGCAATAGTTACCTCATGGCTCTAACATTCCTATTCAATAGGACA
TAGATAATCACTTCTAGTCTTTCCGCCTTAATTGAGCCACTTACTATACATCATTGGACTCATAATTAGGTCATCTTTTAGATTCCATTTACGCATCCTC
AATCTCCCCCCCATGTTATAACCAACTTCTCAAATCATATTCATCCTTTAGTTCGAATTACTTTGTTGAATTTACATCATGGCCGTGGCTATTGCTTGTT
CCTATCCACCCTCTTTTTATCTTCATTTGATCACACTGTA
TTCACCAAGTGCTATAACGCGTCTGCCCTTTATCTTATTTTGCTTGCCTCATATTCTGCA
CTGACTATCGAAGTTGACCTCCTTGTCTAATCTCTCATTAACCTACTTATTTTTATGGTCTGTTTATTCGTAGAAGCACACCTCCATTGGTATGCATTAT
ATATATTTTCTGTGTCTCCTATCTTTTCCGCCGTCGTACTCCTTTGTCCCTGACCTCACAACCACACTTAACGTACAATCATATTCCACACGACTCCCAT
GTCCTAACATGGGACCCGCCTCTGACCCACTCCCTAATATCTCTCTGACTCTGGTACTAAACCATCACACATCGCACTTACTCGTCTGCGACTTAGAACG
TGTTGCGACCCCGCTTACTTCTTCGTTGGTTCGGTGTGCATTGATTTGATGGGATGACTTGTCTTTACGCTCCTGACCCCTTACTGGCCTACGCACAATT
CATCTTCACTGTACCTCTTATATTCACCTCATCGTAGCTATCTCTCTAGTTCATCCCTTAAAATTCAATCT
>LE_HBa0178I09_SP6_124991 (trimmed for quality and cloning vector)
TTC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.6088
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0178I09
Clone
Clone name
hba-178i9
LE_HBa0178I09
C03HBa0178I09
P178I09
Clone type
BAC
Contamination
none
Estimated length
119,278
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found