Clone Read LE_HBa0178I15_SP6_124997

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0178I15_SP6_124997
Primer
SP6
ID from Seq. Facility
LE_HBa_178_I15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1125 raw
Sequence
>LE_HBa0178I15_SP6_124997 (raw untrimmed)
GCGAGGGGAGAGGGGGGGAAGGGTTGAGGTTTGACGGGAGATGTGCCACGCTTTTCTCCTCCGTCATCTAGGTCATAGTTGAATATGTCTTCGATAACGC
C
CTTTTTAGGGGGGGACACGGCAAGGTTTCATCANAGTCGTTTCTCGCGGCCGCATCCTTTTACGGGAGGACCCTCCCACGCTTTCCCCGCGTCACCTCC
AGCACTGCCAGTCTAGGGCACGACTTGATAAGAGGAACCTACTCACACTCTAGACCTGCATTCTATATGTTTTATTATGCCGCTCCTTGTACTGACCCCT
CTGCGACAGAGGTGAGATCTCCTCCATTCACCTACTCTAGCGAGTCTGTATGTCGTCCTTTTCGTGTGAGCTGCTAGTTATGTACCCGGTCCCACTAACG
TGCGACACACACCTCTACTATCTCTCCGCGCTTCTTCACATTTACTATACCGTACTGACAAGGCAATCCAGAATAAGTACCCTGGCGCACGCTACCGTCC
AATATATGTCCACATGGCTACAACCTCTACTCCTCATGGTGTGGCAGTCTCTCTATGTGTCTTCTTTTATCCTTTATTTACCTCCTCTATTCTTCTCATC
CCCGCACGCATACTCAACATCCCATCTCTCAATCTAACCTCGCCATTTCTCTCTTCACTCTTTCCGTCCCCCCTCCACTCTTGCGCCTCACCACTTCCTC
CGTAATTTCTCTTTGCATTCTCTACGTATTCGTCTCTTCATATTACTGTGAGACTTCCGCCCCTTCCCCGCTCATGTCTATTGACTACTGTCTCCCCTGG
GATTCTGATCAGTGGATTCTTTGTATTCTTTTTGTTACAATTATTCTTCTTCATACTCGTCTCTTCCACCCCTATCCTACATCATTTTTATTCTATGTCC
CCTCTTTCCTGTACTCCCCCGCATCCACCTGGCCTATCACCTATACACGCGCTTCGCATGTCACGCATCCACCTCAGATCTATCCCACACCGACACACTA
TCTCTGTCACCAGGTATCCTGCGGCCGTGATCTCACGCTACATCTCTCTGCTGCTGATATGATGGCTCTCTTGACCCCTGGTAACTTACAATCATATCGC
TATCTAAACTTATGAATACCAGGGA
>LE_HBa0178I15_SP6_124997 (trimmed for quality and cloning vector)
CTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.0179
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0178I15
Clone
Clone name
hba-178i15
LE_HBa0178I15
P178I15
Clone type
BAC
Contamination
none
Estimated length
88,000
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found