Clone Read LE_HBa0179P09_SP6_125543

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0179P09_SP6_125543
Primer
SP6
ID from Seq. Facility
LE_HBa_179_P09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
32 trimmed for vector and quality, 909 raw
Sequence
>LE_HBa0179P09_SP6_125543 (raw untrimmed)
AACAGGGCGGCAAACAACAAACGGAAGCGGCCAACAAACCCGCCCCGTCAGTAAAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAA
AACACCCGCTGCCTTACGGGCCCCAGCANCAGGACNAGCGGCCACCCNAGGCCACACCCCACAATAATTCCCCAAACCACCCCCCCCCTACCAGCCACAG
CGGGGCGGGAGAAACACCAACCNCGCACAAAAGGCAGAGGCGGCCGGGACCCCCCACCACCCAACCAACACCCANCANCCCACCCCNCACCCCACCCACC
AAACAACCCACAACGACACCCCCCCAACACCACCACCCCGCGCCCCACCANCACCCCACACACCCCAACACACAACAAAAACACCACACCCAACCAAACC
CCCCCCCCANACCCAAACCAGGGGGGGGGGGGGCNACCAAACCAACCACAAACACCAACCCACCACCACCCAAACACCACNCNCCNCCCACAACAACCCA
CCCACACACCCCCNNCCAACACCCCCACCCACACACCCANACCACCCCCACCCCCCCCCCNCCCCACCCCCNCCAACACACCACCCANACACAAANACCC
CCCCCCAGCCCACAACCAACCCCACACACCACACAACACCACCCACNCCACCACCCACACACCCCCNCAAACCCCACCCCCCAAACACCCCCAACACACC
CCCCACCAAAACNCAACCCCACACNCACCAAACACACAACACANANCACAAAACACCNACACAACACCCCNCCCACCACACCCNACCACACCCACCCCAC
ACCCCAACCCACCNACCACAACACCCCCNAAAACCCCCCACCCCACCACCCACACCACACCACCACACCCCACCNAACCCCACCCCCCACACCAACACCC
CACCCCACN
>LE_HBa0179P09_SP6_125543 (trimmed for quality and cloning vector)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.477
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0179P09
Clone
Clone name
hba-179p9
LE_HBa0179P09
C12HBa0179P09
P179P09
Clone type
BAC
Contamination
none
Estimated length
83,497
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found