Clone Read LE_HBa0054O24_T7_12623

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0054O24_T7_12623
Primer
T7
ID from Seq. Facility
LE_HBa_054_O24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1482 raw
Sequence
>LE_HBa0054O24_T7_12623 (raw untrimmed)
TCTTTCCTCAGCGACTAANCACTACGNTGCGTAGTCCATACGGGTGTGCATGTATGCGTAATCTGTCATCAGTAAGTTGGAGATACTCGTCTATGGCCCA
GTGTCACAAGGCCGATATAAAATCGGATATAGCCNAAGAGAGATACAGAACCTTCTCTTCCTCCAAGGAGGAGCAGCGGCGCAGCTACAAAGATNCCATA
GCTAGATACATGGAGGACGTCCACCTCTCTCTCCCCAGACGCGAGGTCCAGNCACCATAGCTAACTGTTGCCTTCTGTGTGTATGCACTGCATTTGCTAG
TAGCTGCTACGAGAGCTGCAAATAACATTCAGAGGGTGTTCTCCCCTATAGTCTTGTTATGCTATTTAAAGCAAGCGATGCGCACGTGCAAACGCACGTA
TCCTAGTCTCTTCTTGTACAATGCACATGCGGCGAGCATAAGATGNGAGAAATCATAGTAACAAACAGTAGTGTTAGATCTGAAACGAAATTATAACCAG
ACCTGCGCGAAGTCTCAGATTACATCCAATTNCTCATTGTTAGAAGAAATGTGTAGAATGAGATGATTGAAGGATTGTCTCGTCACTGCTCAACGAGAGC
ACAGAAGACATCGTATACGATAAATGACAGNGAACGTGCAATCTGACAACGTGGTGTGCTCCACTGTATATGAAGCCATAGTAGGGAGCGCTATTATGGC
ATTGACGTTGAAAGAGAATAGGCTATCCTCGTACACTACACGNCGTGATGGAAGAGAGAAAGTAGACTGTCGCTAACAATAACATGCCACACTGATGGCA
ACCTCGTCTCTTATATGTTTGGGCTGTGAGGGAGGGTAACACATAATAAAATGATATTTTTAATACTATGCTATGCCTGATCTCACTCACCGCCTCTACA
CGNGACAAGTGCTCGATCTCTGCCCCTTNCACCAAAGATATAAGATAAGGATGCAGCGGACGCGGCCTGGATCGTTGCGCATCCTCCTGCATCTGCCNCG
TGAGNGCGGTCTAATGTGACACCCAATTGACGACACGTATCCACTATATTCTAATGTTATCTTCTTTTAATATCTAACAACATAGTACGATATCTATCAA
CTAAACTTATAACGATGTACATCTACTAAACAAGACAGAGCGAAAAGGCGNACATCTACTAACTTACTAAGGCGTAATAAACCCTGGTNTCGATATNCAG
TAGATATATATTATGATACTATCGCGATAGGACGATGATGAGAGATAATGTTGATAATCGCGTCTCTACTCGATGACCCTTCATGTATAGACTTCTCTGC
ACCCTCATTGCTTGCAACAATTTTCATCTATCAACTCCAGCTACTAAAGAATCCATACAGTGCCTAGTTATACATCACCCTCCGATATGGACGAACGAGA
CAACAAACTACGGATTAGACTATAGAGCNAAATCAGTACTTCTTGTAGGCATATGCACTCACTGCGACTGACCATGCTGTAG
>LE_HBa0054O24_T7_12623 (trimmed for quality and cloning vector)
GAG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.871319
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0054O24
Clone
Clone name
hba-54o24
LE_HBa0054O24
P054O24
Clone type
BAC
Contamination
none
Estimated length
103,020
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found