Clone Read LE_HBa0001A24_SP6_127136

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0001A24_SP6_127136
Primer
SP6
ID from Seq. Facility
Le-HBa001_A24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 1210 raw
Sequence
>LE_HBa0001A24_SP6_127136 (raw untrimmed)
GGGGATGAGTTTGTGGGGGGGGTTGTTGGGGGGGTGTTGGGAAGGGGGGGGGGGGGGGGGTGAGTGTTGTATTTTTTTTTCTTTTAGGAGGGGGGGGAGG
GGTTGGGGGGGAAAAAGAGGGATGTTTTTGTAGGGGGAGGGGGAGAGTGTTTTTGTGGGAGAGAGAAAGGGGAGGNGNGGGGGGGGAGGCAAGGGGAGAA
AAAGAAGGTTTTTTTTTGGAGGGGGGAGAGAGAAAAAAATTTAAAAACANAAAAAAAAAAAAAANNNCAAAAANAAANAAAAAAAANAANACAAANACAA
AAAANAAAAAACCACACAAAACCAAAAAAAAAAAAAAAAAANAANNNNCAAAAAACCACAACAAAAAACAAAAAAAAAAAANAANAAAAAAACAAANAAA
AAAAAACAAAAACAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACACAAAAAAAAAAAAAAAAAAATT
TTTTTTTTTTATTATATTTATTATT
TATATTTTTTTTTTTTTTTATTTTATTATTAATATATCTTTAATATATTATTTTTTTAATATAATATTTTTAACTTTATTTATAATATATTTATTTTATT
ATTTTTTTTTTTTTTATATTTTATAATTTTAAATTTTTTTTATTATATAATAATTATATTATATTATTTAATTAAAAATTATTCTTATTTAATTTAATAT
TTTTTATTATTTAATAATTATTAATATATACTTAATTATTTATTTATTATTTTAATATATTTAAATTATTATATAATAATTTATAAAAATTTTTTTTTAT
TTTATAATTTTATATTTATATTATTTTATAAATTTATTTTTTAATTTTTATTAATATTTTATTTATTTTAATTTTTTTTTTATATTTTATAATTTTATTT
TTTTTTTTTTTTATATAAATATATTTTAATTATTTAATTATATTTTAATTTTAAATTATAATATAATTAATATATATTATAATTATTTAATTTTTATATA
ATTATTAATATATTTTTTTTTAATAATTTTTTTATATAATATTTATTATATATTTTTTTATTATATTTTTTTTATATTATATATTTTTTATATATTTTTA
TTATAATATATATAATTTATATTTTATTTTATATTTTTTTTTTATTTAATATTTTTTTTTTAATATTAAATATAAATTTTTATAATATTTTTTTATTTAT
TATATTATAT
>LE_HBa0001A24_SP6_127136 (trimmed for quality and cloning vector)
TTTTTTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.3351
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0001A24
Clone
Clone name
hba-1a24
LE_HBa0001A24
P001A24
Clone type
BAC
Contamination
none
Estimated length
109,796
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
3 sequencing reads found