Clone Read LE_HBa0001B24_SP6_127181

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0001B24_SP6_127181
Primer
SP6
ID from Seq. Facility
Le-HBa001_B24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
15 trimmed for vector and quality, 1232 raw
Sequence
>LE_HBa0001B24_SP6_127181 (raw untrimmed)
GGGGGAAGGGGGGGTTTTTTTGGGGAAAAAAAGTGGGTTTTTTGCTTTGATTACCAAAGTACATGCGAATTTATCAATGTATCTTTTAAAAGTATTGGTT
TTTAAANAAAATCAATCTCTAAACCTAAAAGAGCCCCTTTTTTTTGTTTNNTGTNGATNTTNNTGGGTNNNNTTTTTTNTNNTNNNTTTTTNTTTTTTCC
TAGGGGGANGNANGANNNTTTTNAAGNANANGNANNNNAANNGANNNNANANAGANNNANGNNNNANGNNGGAGNGGANANANGAACANGNGAAAAAAAA
GGGAGGAANNGANAAGGAANNGAGGNAGANNNGAGGAAAGGGAGAAGGGAGAANGAAAAGGGANNNAAAGAGAAAANGGNAAGGANGGGAGAAAAGGNNN
NGNNANGGGAAAAGAAAAAAAGTTTTTTTTTATTAGATAAGTAAATGTNTTAGGAATTTGTTTATGAAATGATGATTTTTAAATTAGTTATTGTAATATG
AAGTTATGATTGGATTGATTGTATTTAATTGTTGTTTTTNAAATTTTTTTTGATGATAATTATTTATTTTTTATTGGGATTTATTAGTAGTGAAAGGATT
TTAAGAATGAGGATTTATAATTATAAAAAGATTAGTTTGAAGAAAAAATTTTATTTGTTTTAATTATATTTGGATATTAAAATTTGTGTTAAGTTAATAA
GTATATTGTTATAAGTGTTTTAATTTTAATTTGTATATATATGTATATTATATAATTAAATTTAATTAATTGTTGGATATTTTATTTGTATGGTTTTTAT
TATTGATGTTGGTATTATTTATTTAAATTTTTTATTATGTTTATTTAATAGTTAGAGAAGTGAATATAAATTTGTTGTATTTGTTTTTATTTGGATAAAT
GTGATGTAAAATTATTTGTATTTATGAGTTATTGAATTAAATTTATATAATATTTTTATGATAATATTTATTAGTATTAAATTAAAATAGGGAATTTATG
GTGTAGAATTTTGTTATAATGTTTGTATATAATAGATATATTATGATGTGTAATGAGATAATATTGTATAAGAAGATTTGTGAAATTTTTTATTTATAAT
GTATTTGTTAATTATGAGATGATAAAATATTATATAATAGAAATAGGTAATTAGAATAGGGAGAAAATGTAAGTTTTAAGATAATGGTTATATATATATA
AAATATTGAGATTAGATGTTTTGAGTATAAGT
>LE_HBa0001B24_SP6_127181 (trimmed for quality and cloning vector)
ATGATTGGATTGATT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.1372
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0001B24
Clone
Clone name
hba-1b24
LE_HBa0001B24
P001B24
Clone type
BAC
Contamination
none
Estimated length
125,531
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
3 sequencing reads found