Clone Read LE_HBa0015N08_T7_130036

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015N08_T7_130036
Primer
T7
ID from Seq. Facility
LE_HBa_015_N08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
750 trimmed for vector and quality, 964 raw
Genbank Accession
DU051341
Sequence
>LE_HBa0015N08_T7_130036 (raw untrimmed)
CGTAACCTGGGATCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTNTTGGAAGTTAATTTTCTCAAGACTCCTTATGTCCTCATATATTCAAG
GACATAGTCTATATTTCATCCTTTTCTTCTTTTAAGACTTGTAAAGACTTACTATGTATTTCTTTCAATGTAAAGGGTCGTGTCCCGAAGATATTTATGT
CGTGTCTTTAAGTTGACTTGTGACGATGAGACTATACTTAGTATTTATAAAAAAATGTTTTCCTTTTATTATTTATCAAGAAAAGTGTAAGTTTCTGCAA
TATTTTTCATGTCTTAGGTAATGAATGATAGTTGAGAGGATTGTGCAAGACCTTCGAAAGGTCGAGTACACCTTGTGACGACCTAAGGGTTGCCTCAACT
TCTAGGTGTACTTGTTGGTCTTTAAAGGTTGCATGATTAATTTGCTTCCATAGATTGTAGAATAAGGATGGTGAAGTTAAACTTTCAAAATGAGCCCTTT
TTAGAGTGGAAGGACGAAAACTACTTCTAGAGGTCCTATCATTTCTTGTTTGAAAGCTTGTAAGATGATACCTAAATGGCATTTATACCATATTGTAAGT
AGTCAACGATTAAGAGTCCAAAATTCTTCCAATTGAGTCAGTCACCATAGTGAGGGAATTTCCGAAGGTCTTTCCTAATGATCTTCTCAATATTCCTCCT
GAACGAGAAGTTTATTTTTGTATCACTTAATACTCGATACAAATCCCATTTCAATTCCTTCTTATCGGATGGCTCCGGTCGAATTGAAAGATTTGAAGAC
TCAACTCAAAGATTTACTAGACAAGAGCATTATTTGGCCTATAACTCTCCTGGGGTGCTCCGATATTATTCTTTAAAATAAGATGGGTCCCTTTTAAGTG
TATTTATACCGTCAATCAACAAGTCCAACCAATAAAAAGATCCTCCCCCCGATTGATGATTTTT
>LE_HBa0015N08_T7_130036 (trimmed for quality and cloning vector)
AGCTNTTGGAAGTTAATTTTCTCAAGACTCCTTATGTCCTCATATATTCAAGGACATAGTCTATATTTCATCCTTTTCTTCTTTTAAGACTTGTAAAGAC
TTACTATGTATTTCTTTCAATGTAAAGGGTCGTGTCCCGAAGATATTTATGTCGTGTCTTTAAGTTGACTTGTGACGATGAGACTATACTTAGTATTTAT
AAAAAAATGTTTTCCTTTTATTATTTATCAAGAAAAGTGTAAGTTTCTGCAATATTTTTCATGTCTTAGGTAATGAATGATAGTTGAGAGGATTGTGCAA
GACCTTCGAAAGGTCGAGTACACCTTGTGACGACCTAAGGGTTGCCTCAACTTCTAGGTGTACTTGTTGGTCTTTAAAGGTTGCATGATTAATTTGCTTC
CATAGATTGTAGAATAAGGATGGTGAAGTTAAACTTTCAAAATGAGCCCTTTTTAGAGTGGAAGGACGAAAACTACTTCTAGAGGTCCTATCATTTCTTG
TTTGAAAGCTTGTAAGATGATACCTAAATGGCATTTATACCATATTGTAAGTAGTCAACGATTAAGAGTCCAAAATTCTTCCAATTGAGTCAGTCACCAT
AGTGAGGGAATTTCCGAAGGTCTTTCCTAATGATCTTCTCAATATTCCTCCTGAACGAGAAGTTTATTTTTGTATCACTTAATACTCGATACAAATCCCA
TTTCAATTCCTTCTTATCGGATGGCTCCGGTCGAATTGAAAGATTTGAAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.952524
Expected error %
0.8087
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 51 E Value 6e-11 Identity 63.40% Align. Length 292bp (38.93%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015N08
Clone
Clone name
hba-15n8
LE_HBa0015N08
P015N08
Clone type
BAC
Contamination
none
Estimated length
149,860
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found