Clone Read LE_HBa0017E22_SP6_130399

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017E22_SP6_130399
Primer
SP6
ID from Seq. Facility
LE_HBa_017_E22-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1091 raw
Sequence
>LE_HBa0017E22_SP6_130399 (raw untrimmed)
TTGGGCCAGTTGTATTTTTATCCTGAGCAGATTCATACTGCAGAGTCTTCTCAAATGATATGCACTACCCATGTGGTGCGTATATACTTGTGACAAATGA
ATGTAAATGTCTTGGTTCTTGAGGTAGTCTCGGTCTTGCAAGCGTTACTGTGATGTCTATACGTAGTAACGTTCATTGTACTGCTACCTGGTCATATATT
TA
CATGCACACGATTGCGAACTACATCCACTCTTCGAGGATATAGTGTGCCGAGGCTGAGTGGCAGTGGCTTCTTTGGTAGTAGTATATGGTGATAGAGA
GATAAACGAAAATCTCTTCATCCACCATTTCACTATAACTACGTCAATTCCCTGAATTGAATACCACAAAAGTAACTACCCATCTCGACTGAACCAACGA
GCTTCCTCTCTACTATATCTGTTGACTTATAATGAATTTTGCACTCCTTATTTCGCTAGGTGACTAAATGTCATAGATGCATAGCTGCACCATTCGATCA
CTCGTAGATGATTTGTAGTGGTCGAAAAGAGGATAGCGAAACACGAAAGCTAGATTCTGTAAGGGATATTACACGCGTGCAAGCAACTTTGAGCTTTGAT
CGTGCTTGGATAGCAATAGCGGACTGACAGATCTAAGTTGCTTGATACATTTGGTCCCAGTCTATCATGGATGATAGTCGGTGGATATAGTTAACGGCGA
ATAAGACTTGAAGCTTGATTGATACCTGACCTCCCAATGGAGCGATGTATCTGGACTGCTTTCCCACCGACTTTGAATTCCATGGGCTTCGCCAAATTAT
TACTTACCTCATCTGGGCTAGCTGATATTGTTACCACTCAAACTTAGTCCTTTTCATACCAAAGAATAAAATTACCTGTACCACGTTTAAATAAATTCCT
TCTGAGAATAAACCCTTACCTGTCAAAAGAGTTTTGCCCAACCCGCCTTATTCTCGCTTTTTGTTCCAAAGTTCTCGAAAGCTCCTCTTTGTATTGAGTT
GCATGCCATTTCCTTCCTTTTATGTCCCGCACTCACCCTGATTTCCTCTTTCACTCTCTCCCATAATCTATATCTTTGTTCTCAATTCTCT
>LE_HBa0017E22_SP6_130399 (trimmed for quality and cloning vector)
CATGC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.4693
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017E22
Clone
Clone name
hba-17e22
LE_HBa0017E22
P017E22
Clone type
BAC
Contamination
none
Estimated length
118,676
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found