Clone Read LE_HBa0019C11_SP6_131817

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019C11_SP6_131817
Primer
SP6
ID from Seq. Facility
LE_HBa_019_C11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
615 trimmed for vector and quality, 893 raw
Genbank Accession
DU048896
Sequence
>LE_HBa0019C11_SP6_131817 (raw untrimmed)
CCCCACTTTTGAANGCGGTAAANNGAAGAAAAAAACCACATAGTAGTGGTATGGTATAATCCGAAAACATTTTCGATTTCATAACAAACACACTAAAAAG
GTAAGTAAAAGGTATGTGGAAAAAGTAAACTAACTTGCAATCTTGGCAATGGATAGACCAAGTCCAATGAAAGAATAAGCAAAGGACATGGCAGCAGCAA
TGATGGAAAGGAATGAAAGCTTGTGAAAATTTGGGATTTGGGATAGAAGGATTTGCATAACCCCAAAGATAATTATGAAGGGATTGTTTGACTCATGACA
ACCAGCATCATGACCTTTCCTATGAAAGCAGTTAGATCTTTTAATTGCCCTGATAAATAAACATACAGAATTAATCATTAGGAATTAGGATTAAACAAAA
AAATGTAATACACAAATCAAATATCTTACACCATGCTTATGGATGTGGTGATTGCATATCCAATGGTAACACCAAAAAGGTTACTATATTGAGCTAATCC
ACAAAGCTGGACTTTCCTTCCTCCTGCATTCATACAAAATATATTAAAATTTTACCGCGTAAATATTATGACACGTTTAAAAATATAAATTTCAAAAAAT
TTATTTCCCCATCCACGCTTATTTTTTCATGTTAATTCAAAATTTTATCACGTAAATTGAAACCGTCAAAACTCAAGAGAGTTGAGGTGGCAAAATAAAG
AGGGAAAGATAAATGAAAGAAGGTAGTAAATCATTAATGAAATGTTCCAACCAAAAACAAATAAAAGGTTGGGCTTTTATATAAAAAATATTGGATAGTC
ATTAAATGATTCCCAACCAACAACCCCCCTTCCCCTCCTGGGGAAATTGGACAAGGGGTAACCAGCCTTTATTTTTCCCTTTCCTTAAAATTC
>LE_HBa0019C11_SP6_131817 (trimmed for quality and cloning vector)
ATGGTATAATCCGAAAACATTTTCGATTTCATAACAAACACACTAAAAAGGTAAGTAAAAGGTATGTGGAAAAAGTAAACTAACTTGCAATCTTGGCAAT
GGATAGACCAAGTCCAATGAAAGAATAAGCAAAGGACATGGCAGCAGCAATGATGGAAAGGAATGAAAGCTTGTGAAAATTTGGGATTTGGGATAGAAGG
ATTTGCATAACCCCAAAGATAATTATGAAGGGATTGTTTGACTCATGACAACCAGCATCATGACCTTTCCTATGAAAGCAGTTAGATCTTTTAATTGCCC
TGATAAATAAACATACAGAATTAATCATTAGGAATTAGGATTAAACAAAAAAATGTAATACACAAATCAAATATCTTACACCATGCTTATGGATGTGGTG
ATTGCATATCCAATGGTAACACCAAAAAGGTTACTATATTGAGCTAATCCACAAAGCTGGACTTTCCTTCCTCCTGCATTCATACAAAATATATTAAAAT
TTTACCGCGTAAATATTATGACACGTTTAAAAATATAAATTTCAAAAAATTTATTTCCCCATCCACGCTTATTTTTTCATGTTAATTCAAAATTTTATCA
CGTAAATTGAAACCG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.918555
Expected error %
0.1534
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g49630.1 Score 105 E Value 1e-34 Identity 67.60% Align. Length 388bp (63.09%) Frame 3
68418.m06141 amino acid permease 6 (AAP6) identical to amino acid permease 6 (AAP6) [Arabidopsis thaliana] GI:1769887
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g58360.1 Score 101 E Value 6e-33 Identity 63.40% Align. Length 388bp (63.09%) Frame 3
68414.m06638 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO13688.1| Score 144 E Value 4e-47 Identity 100.00% Align. Length 388bp (63.09%) Frame 3
amino acid transporter [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA72006.1| Score 116 E Value 3e-34 Identity 76.10% Align. Length 394bp (64.07%) Frame 3
amino acid carrier [Ricinus communis] pir||T09840 amino acid transport protein AAP2 - castor bean (fragment)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019C11
Clone
Clone name
hba-19c11
LE_HBa0019C11
P019C11
Clone type
BAC
Contamination
none
Estimated length
86,018
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found