Clone Read LE_HBa0019C11_T7_131818

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019C11_T7_131818
Primer
T7
ID from Seq. Facility
LE_HBa_019_C11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
809 trimmed for vector and quality, 914 raw
Genbank Accession
DU048897
Sequence
>LE_HBa0019C11_T7_131818 (raw untrimmed)
GCCGGGTCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCTTCTTTTCCTCATTCTCAAAATACTTGGACCCTTTACTCATTTCATACAC
TATCCTCTGTACTTTTTCCTTGTCCACTCCTTCCATTCCTACAATTTCGATCATCAATCACTAAAACCTCGTATAGAAAAACATTTTAAACTTTGAGAAA
AATTGATCCGAAACCAATTTAAACAAGTTAGGTCAACTAATCAACTCATTTTACATTCAATCGATTGGAAACAATTTCATTCTGAACTGATCATTTACAC
TTCAAACAGATGATTGAAGCAATTAATTGTAATAAAACAATTGGAAATACCTAAATATAAAAAAAATACTAGAAAGTAAAAATTACCTGCTTTGGCATTG
GTGAAGACTGTGTGATAAGATTCCCATGGGCGAGAAGAGGACGGATCTTCGCTCCCAACTGAAGCTTCGCTCTTCGCCATGGATTGAGTTGCTTCGACAA
GAAGATGAAGTTTTCACCTAAAAGGGAAAGACCGCGGCTTTTGATTTTGTCTCAATTTGATAAATATTTTACGCGCCACCTCTTTAGTTTTTTAAATCAT
ATTTTGCACACTTAAGTTTTTGAGTTTCACAGATTTCACCCCCGTACTTATTTCCCCGGTAACAGAGGTCCAAAACTTTGCTTAATGATTCATTTCTCGC
CATTGCTTTAAACAAACAATTTTGTACCTCAAAATAATTTATTAAAGAAAATATGTATTCCTACTCGAAGGTGATGACGAATTTTTTAACCCAAACTAGG
TCCTTATAATAAAATAATTTACCAAAGGTAAATAAATTTTTTTCCTAAAATTTTACCAAAATTTAGGTAATAAACCGGTATTTTTCACGGGGAAAAGCCT
TTTTATAGGGGGGT
>LE_HBa0019C11_T7_131818 (trimmed for quality and cloning vector)
AGCTTCCTTCTTTTCCTCATTCTCAAAATACTTGGACCCTTTACTCATTTCATACACTATCCTCTGTACTTTTTCCTTGTCCACTCCTTCCATTCCTACA
ATTTCGATCATCAATCACTAAAACCTCGTATAGAAAAACATTTTAAACTTTGAGAAAAATTGATCCGAAACCAATTTAAACAAGTTAGGTCAACTAATCA
ACTCATTTTACATTCAATCGATTGGAAACAATTTCATTCTGAACTGATCATTTACACTTCAAACAGATGATTGAAGCAATTAATTGTAATAAAACAATTG
GAAATACCTAAATATAAAAAAAATACTAGAAAGTAAAAATTACCTGCTTTGGCATTGGTGAAGACTGTGTGATAAGATTCCCATGGGCGAGAAGAGGACG
GATCTTCGCTCCCAACTGAAGCTTCGCTCTTCGCCATGGATTGAGTTGCTTCGACAAGAAGATGAAGTTTTCACCTAAAAGGGAAAGACCGCGGCTTTTG
ATTTTGTCTCAATTTGATAAATATTTTACGCGCCACCTCTTTAGTTTTTTAAATCATATTTTGCACACTTAAGTTTTTGAGTTTCACAGATTTCACCCCC
GTACTTATTTCCCCGGTAACAGAGGTCCAAAACTTTGCTTAATGATTCATTTCTCGCCATTGCTTTAAACAAACAATTTTGTACCTCAAAATAATTTATT
AAAGAAAATATGTATTCCTACTCGAAGGTGATGACGAATTTTTTAACCCAAACTAGGTCCTTATAATAAAATAATTTACCAAAGGTAAATAAATTTTTTT
CCTAAAATT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.941052
Expected error %
1.9169
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g49980.1 Score 65 E Value 6e-11 Identity 30.20% Align. Length 95bp (11.74%) Frame 2
68414.m05609 UMUC-like DNA repair family protein low similarity to DNA polymerase kappa [Mus musculus] GI:14279087; contains Pfam profile PF00817: ImpB/MucB/SamB family
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019C11
Clone
Clone name
hba-19c11
LE_HBa0019C11
P019C11
Clone type
BAC
Contamination
none
Estimated length
86,018
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found