Clone Read LE_HBa0019G01_SP6_131989

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019G01_SP6_131989
Primer
SP6
ID from Seq. Facility
LE_HBa_019_G01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1152 raw
Sequence
>LE_HBa0019G01_SP6_131989 (raw untrimmed)
CCCCCTCTACTCCTTCCCTCCGTCACTCATGCGAGCTTATCACTTATCCTCCCCTGCCTTATTTCCTTTTCTATAAAATACCGTATTATTAATGATAACG
AGCACACCCCTTTTCTCTCGAATAGTATAGTGAAAACGTGACGGCGATGTCACTGCTAACTCCCTCCTTCTATAAGAGGCACGCTCCTCTTGACCAACTA
GCAGATGCCTAGGAGACCTCAATCGTNATTCCCTGCTGCCAAGCCTCATCCCAACCCCTCTGTACGGTCTTACTCTACATGATTCTTTACGATATGATGT
CTGAATCACCTGCATTCCATGGTATATACACTATACCATCGTGTTATACGCATGGTTGGCTCTACAAGTCTCTATACCATTGCTGGCATATCTTCACCTA
TTACATAGACTGATGCCCTCTATCATACATGCGCGTCTAGAAAACGACACTTAGAGCCTGCGTGCAGACATAGCCCACCCACTATCCACTGATGATCAAC
AATATTGTCTTTTTCACCTCTGTATACTTCCATACTAACTTGGATCGCGATTCTACAGTTATAAGCCGCGCCGTGCATCACTCTTAGTAACATACTCCTC
CAGTCCGCGCTGCTGTACGGTGTAGCATGTCGGTTGATGCAAGCACATGGCCTCCACCACTGTGTCGGACTTCTTCACAACTTCAACAACGTGCTACACA
TACTAAGCTCTAAACCACACCCACGTACCTATGTATACTCATACAATCCATCAATCGTCCAGTATTATACCCCCCCAACCCTTCCATGATTGAACTATCT
ACCTGTCCTAGACTAGCTGTATCTCTAGATCTACCACTACTATAACACGAACAAAAACAAAATTAATGTCGATAGGAATACATTCATGCTACAGAGACTG
TTGGAATGGGTATGGATGCCCCGGCGGCTGGTTATAGCTCCGCATACTACCGATCCAGACATCCCATTATGACAATGTCAATGATCTGACATTACCTTCG
ATGCATTGACCTGTTGTTTCTCCG
CTCCCCCTTCTATACTTCTTGGCTTACTCTTGCTGCTTCTCATCTTCTCTTTGTCCTCTGCCTACATTATCTCATT
GCTAATGTCTACTAGGTACACTTATGCTGATTAATACTGCTGAATCGGTTTA
>LE_HBa0019G01_SP6_131989 (trimmed for quality and cloning vector)
CTCCC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.7994
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019G01
Clone
Clone name
hba-19g1
LE_HBa0019G01
P019G01
Clone type
BAC
Contamination
none
Estimated length
96,304
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found