Clone Read LE_HBa0023B15_T7_134082

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023B15_T7_134082
Primer
T7
ID from Seq. Facility
LE_HBa_023_B15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
416 trimmed for vector and quality, 832 raw
Sequence
>LE_HBa0023B15_T7_134082 (raw untrimmed)
GTTTTCCTCATTTTTAAATATAGTTGATATATACCTCATATATATAGTGTCATTTTCCCCCTTCCTTGAAAGGGTAAGACACAGGTACTTGGTTCGCTTA
TAAGAGAGCTCTGGAAAGATCTCAGAACTCTCTCTAGATTAGTATGTAAACTACAGAGGTCTCAACATATATCTCTGAAATTGAGGACGAATGACACAGG
TCATGTACAATTGTTAGTTTGCTCTTAATCCCTTTTGTGATCTTCTCAGTCAGCACCTTAAGCAAGCAGAATCTAGAGAGATATGTTGGTATTATATGAA
GCTCTGGATTACTAAATGTAAAAAGTAAAGGACATCTATCATGATCCTCTAATTTTATTCATACTAGATCCTTGTAAAATCCAGAGGATATAATAATCTC
TTATTATTTTTAAATATGAATGGTGCACGGTAAGCTTGCCCGTACTTTGACTAATCAACTGGACGCCTGTCCACAGCCCACTAGTACTTCTTATCAAGAT
AACTAGGCCTAGCAACACCCGTACATACAATATCTTGACATTTGGGTACAAGTACCATTTTTAGAGTTTAAAATATCATTGCACCCCCCCCCAAGACCAA
AGCTTTTAGAATAAGAACTAACCAAGGGGCAAAAATGCCAACTAGGTTAATGGAGAATAATCATTTAACCAAGTTCCTTATCCTTTATCCTCCCACAAAT
GGACCCATGATGGCACCCGAAATAAAAGGGAAAAAATTTACCCCCCAGGCCTTAAAAGTTTCCACTGGTCATACTATATACGCAAGAAAAGTATAATCCC
GGTTCTTATATTAACAAAAAACAATACTATAC
>LE_HBa0023B15_T7_134082 (trimmed for quality and cloning vector)
TATATAGTGTCATTTTCCCCCTTCCTTGAAAGGGTAAGACACAGGTACTTGGTTCGCTTATAAGAGAGCTCTGGAAAGATCTCAGAACTCTCTCTAGATT
AGTATGTAAACTACAGAGGTCTCAACATATATCTCTGAAATTGAGGACGAATGACACAGGTCATGTACAATTGTTAGTTTGCTCTTAATCCCTTTTGTGA
TCTTCTCAGTCAGCACCTTAAGCAAGCAGAATCTAGAGAGATATGTTGGTATTATATGAAGCTCTGGATTACTAAATGTAAAAAGTAAAGGACATCTATC
ATGATCCTCTAATTTTATTCATACTAGATCCTTGTAAAATCCAGAGGATATAATAATCTCTTATTATTTTTAAATATGAATGGTGCACGGTAAGCTTGCC
CGTACTTTGACTAATC

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952528
Expected error %
0.2118
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 86 E Value 1e-18 Identity 96.60% Align. Length 57bp (13.70%) Frame 2
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023B15
Clone
Clone name
hba-23b15
LE_HBa0023B15
P023B15
Clone type
BAC
Contamination
none
Estimated length
113,993
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found