Clone Read LE_HBa0024G23_SP6_135105

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0024G23_SP6_135105
Primer
SP6
ID from Seq. Facility
LE_HBa_024_G23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
579 trimmed for vector and quality, 890 raw
Genbank Accession
DU047046
Sequence
>LE_HBa0024G23_SP6_135105 (raw untrimmed)
AGAAAAACCCTTACTTGTCTCATTGCCTTTCTAATAATGAGGATCCGTTTGTAGACAAAGGTAACTCCAATTGTTGAAGGCTATGGAGGCTGGGCTTTCC
GAATGGAAATTGTACCATTAGAGTCTGCATATCCCGGATTTGGAGAACTAGTTGTAAGTTGCTCAAATTGATGATTTCTGGACACCTAAATTTGTTATAA
TAGTCTGCAATTATCATTTTTGATTGCTTGCACTGTGCGGTTGAGCATTGCGACCATAGTAGTGTGTTTTTTCTTCTACTTAAAAGCTTACTTTGATAAG
GCAGATCATGTTAGTGAAGTATTCTTCTTTCAGTTTTTGGGGGTCTAGTGAACTTTTCTGACAGTTGCATATATAAATAAATGTTAATGGAAACATGGAG
TTAATTATCATCTTAATAGGAGATAATCTAATCCATTTTTTGAAGTGGTTGTCGCTTTATGTTATTTCTCAAGTTTCTAAAATTTTATTGGGTGAGAGGA
AGTGAAGCTTTCCGAAAAGGCTTTCAATGTAGGTAGCGAACAAAACCTGAAAGAACTTGATCCCAATGTCTTGCATCCGTCTTATACTTGTTTTTTGACT
GTGCAATTTGGATGGAGATTGTTCTGCTGGAGTTACGTAAACACATGATGTTTTGATTTCACTGGATGCAGGTTATGGAGTCAACTGAACCATATTAATT
CCTGCAAGCCTTTGAATCGCAGCGATCTTTCTCAAAAAGAACACTAAAATTTCTTGCAAAATTGAAATTTCTTTATTAAATATAATAACTGTCTTAATCC
TCACCCAAGGATAGGGGATTTTGATTTCCTTTTTCCCCCTGATTTCACAGCCAAAATTGTAAGTATTCTTATCTTCACTCGCGCTCTGAC
>LE_HBa0024G23_SP6_135105 (trimmed for quality and cloning vector)
TCATTGCCTTTCTAATAATGAGGATCCGTTTGTAGACAAAGGTAACTCCAATTGTTGAAGGCTATGGAGGCTGGGCTTTCCGAATGGAAATTGTACCATT
AGAGTCTGCATATCCCGGATTTGGAGAACTAGTTGTAAGTTGCTCAAATTGATGATTTCTGGACACCTAAATTTGTTATAATAGTCTGCAATTATCATTT
TTGATTGCTTGCACTGTGCGGTTGAGCATTGCGACCATAGTAGTGTGTTTTTTCTTCTACTTAAAAGCTTACTTTGATAAGGCAGATCATGTTAGTGAAG
TATTCTTCTTTCAGTTTTTGGGGGTCTAGTGAACTTTTCTGACAGTTGCATATATAAATAAATGTTAATGGAAACATGGAGTTAATTATCATCTTAATAG
GAGATAATCTAATCCATTTTTTGAAGTGGTTGTCGCTTTATGTTATTTCTCAAGTTTCTAAAATTTTATTGGGTGAGAGGAAGTGAAGCTTTCCGAAAAG
GCTTTCAATGTAGGTAGCGAACAAAACCTGAAAGAACTTGATCCCAATGTCTTGCATCCGTCTTATACTTGTTTTTTGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.951995
Expected error %
0.6049
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g34310.1 Score 74 E Value 7e-14 Identity 32.40% Align. Length 101bp (17.44%) Frame 1
68417.m04877 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_195157.2| Score 74 E Value 3e-12 Identity 32.40% Align. Length 101bp (17.44%) Frame 1
expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0024G23
Clone
Clone name
hba-24g23
LE_HBa0024G23
P024G23
Clone type
BAC
Contamination
none
Estimated length
60,218
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found