Clone Read LE_HBa0024H21_SP6_135149

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0024H21_SP6_135149
Primer
SP6
ID from Seq. Facility
LE_HBa_024_H21-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1313 raw
Sequence
>LE_HBa0024H21_SP6_135149 (raw untrimmed)
ACTCTTGAGGTCTACTGAGACAATNTCGTGCTATCCTCCTCTCTCTTTATACGAGAGAGGCGGTGCTATCTACTCTCTGTACTATGGATAGCATACTGTN
AGACCGCTCAGATGGCAGAATAGCCGTGAGCTGAGTGATAGAGAGGGGNCATCATGACTAATATNATCATGTAGATGCACACTACGTAATNATATCTGAT
TCCAACAGTGTGTNAAGTCGATAGAACACGACCGCCGTGCCACGTGTCTCTGCAGAGTGTNGTGCTACATGGGCGTGAATGCGTCATCGCACGCAACTCC
GCGAGCTCACGGCCNTCTAATGCTCNCAGCTATCGATTGGCCGCACTCTGTACGCNCTCATGANCATNGCANCCATACCTATNCTACGCCTACGACGNAC
GTGCACTACGGACGACGGCTGAGCAACTCACCTGCGNGCACGCTATAGGCTTGCAACTGCTGNTCGAGCGTTCTGGCATACGCGCTCGACTGCGCGGCGA
CGATGTGGTGGTTGTGTGTTGCGGCTTGCCGATACTACACCGTCTAAGTGTTGATGCTCTGATGTTCATGTACGTGTGCGTCACTGACACTAGAACTGTC
TCTATATATCACACGAGGATCAGGAGTATCGCGTGACAGATCATACATANTGACATCGCTCACGCGTGTCTAATGCGGCTGTTCGACTGCGCCANTCACA
NAGCGTGCTNCACTACATAGNGACGCACAGTNGNAGCTCGTAAAGCATCGCNGTAGACGGTGTGTATGATGTTAACATCATCNTCTANCNGCGCGTCACT
AGATGCTCACTTACACGATTCATAGCGCACACAGCTCGCTGCGCAACTCACTACCTCACATACATCTCATACCAGTGGCACAACTGTCACTATGTGACAC
GTACTAGACCAGGATGCANGGTACGNCATCGCTCATGTGTCATGANGGTAGTATACTGATGCGCACGACTCAGATCNACAGCNNANCAAGTGGTACATGC
GAATNCTGTGATCGACGACCCGCTAATACTCAGTCTCAATACNGTGCAGTNACGACGCTGCGCTACACCTAAGGAGCGCACATCGAGTGACCACTGTGGT
ACACTGTCAGATGCTCTCCTGCTCTGCGTGTACTATCGACTTCGCAGGCTGCTCTTNTNGATCGCGACGACGACGTGCGCACTGGTTGCGGTCCGATGTG
CGACATGATATGTCGCAGTACGCACTCCTACTCATANANTCATGCCTACGACTCTNCNGATTGGGACTGATGACATTGCTCTANCACGATCTCGATGTGA
NTNTCGTAGCCAC
>LE_HBa0024H21_SP6_135149 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0024H21
Clone
Clone name
hba-24h21
LE_HBa0024H21
P024H21
Clone type
BAC
Contamination
none
Estimated length
79,128
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found