Clone Read LE_HBa0026C13_SP6_136429

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0026C13_SP6_136429
Primer
SP6
ID from Seq. Facility
LE_HBa_026_C13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
594 trimmed for vector and quality, 879 raw
Sequence
>LE_HBa0026C13_SP6_136429 (raw untrimmed)
CGTCGAGGTCGTCCCATGGTGCAGTCCTCCATCACCCCATAAATTGCGATTTGCTGAGTTTAAGAAAGAAGTGTTTCCTCCCCCACTTCCTCCGTCAAAC
CCAATGCCACCACCAAGTCTGCTTGAGCTATAATATGGATTCAGTCCCCGTCCATAGCTTAAACTACTGTTAACATTTGCACTACCACCATATCCTGGGC
TCAGACCTGGTTCAAAGTTAAGACCCATACCATAACCAGAACCAAATGGAGTAAAGACACTCCTACCCCCAGTGATGGGGCTAAATCTACCATCCATACC
GACTCCATATCCTCCAACTGTATTTGGAGAGTATCCCTGTGCATACCCATCAAGGAAGTTATTCATCCTATTTAATCCATAGCTGTACCGACCAAGTGGA
CTTTGGCTAGGACCTGGGGATAACTCTTTGGGAACAGCGCGCTTGACCTCAACCATTTTATCATTCAGCTCATGGTAAGACTTGAGCAAGACTTTATCCA
CTGCATCCTCTGAATCATAAGTGATGAATCCAAATCCCCTAGGCCTTTGAGTGTTATGATCATACATAACTACTGCATCTGTGATTGTTCCAAATTGCTC
AAAATACTGCTTAAAGGGCAGTCTCATTGACATTGGAATGCTAACCACCCAACGAAAAATCTTTCTTGTACTTCCTGTACCAGGACTAGGAGAACCATGA
ATACTAGGATTGTTCTACTTGTCCTGCTTGGGTCATCCCCTGGGACTTGCCTCTTTGCTCCTCCTTTAAAAAAAGAAGTCAAAATATCCCGTTAACTGAA
TATTAATAATCTTATTTTTTCCCTTTTGCTCCTCTGGATCTTTTCATATTATGTCCTCAATTCTTGCGTCTTACTTTAT
>LE_HBa0026C13_SP6_136429 (trimmed for quality and cloning vector)
AGGTCGTCCCATGGTGCAGTCCTCCATCACCCCATAAATTGCGATTTGCTGAGTTTAAGAAAGAAGTGTTTCCTCCCCCACTTCCTCCGTCAAACCCAAT
GCCACCACCAAGTCTGCTTGAGCTATAATATGGATTCAGTCCCCGTCCATAGCTTAAACTACTGTTAACATTTGCACTACCACCATATCCTGGGCTCAGA
CCTGGTTCAAAGTTAAGACCCATACCATAACCAGAACCAAATGGAGTAAAGACACTCCTACCCCCAGTGATGGGGCTAAATCTACCATCCATACCGACTC
CATATCCTCCAACTGTATTTGGAGAGTATCCCTGTGCATACCCATCAAGGAAGTTATTCATCCTATTTAATCCATAGCTGTACCGACCAAGTGGACTTTG
GCTAGGACCTGGGGATAACTCTTTGGGAACAGCGCGCTTGACCTCAACCATTTTATCATTCAGCTCATGGTAAGACTTGAGCAAGACTTTATCCACTGCA
TCCTCTGAATCATAAGTGATGAATCCAAATCCCCTAGGCCTTTGAGTGTTATGATCATACATAACTACTGCATCTGTGATTGTTCCAAATTGCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966102
Expected error %
0.3667
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g07810.2 Score 258 E Value 2e-69 Identity 21.60% Align. Length 581bp (97.81%) Frame 3
68416.m00956 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g07810.1 Score 258 E Value 2e-69 Identity 21.60% Align. Length 581bp (97.81%) Frame 3
68416.m00955 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN12995.1| Score 258 E Value 7e-68 Identity 21.60% Align. Length 581bp (97.81%) Frame 3
putative RNA-binding protein [Arabidopsis thaliana] gb|AAL32012.1| AT3g07810/F17A17_15 [Arabidopsis thaliana] ref|NP_566321.1| heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK92717.1| Score 258 E Value 7e-68 Identity 21.60% Align. Length 581bp (97.81%) Frame 3
putative RNA-binding protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0026C13
Clone
Clone name
hba-26c13
LE_HBa0026C13
C12HBa0026C13
P026C13
Clone type
BAC
Contamination
none
Estimated length
151,214
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found