Clone Read LE_HBa0028M19_SP6_138457

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0028M19_SP6_138457
Primer
SP6
ID from Seq. Facility
LE_HBa_028_M19-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 894 raw
Sequence
>LE_HBa0028M19_SP6_138457 (raw untrimmed)
TGGAGCGTATACCCATCACTGGTGGGAAACTTTNTNNGAGGGTTATANGNCGNGTCTACCATATAAAGGNGTTGGGAGCCTTTAAAAATAAAGAGCAGGT
CACCCTTTAAAGAGGTCGCAAGAACAAAACGTGAGGTTATGAGGCTGACTAGGAAGGTTGAACTACAACAACAAATTCATTACCCAACGCGCAGCAACTT
GTGATCCTATCTTTATGATGTTGAGAAGTAATGACACAGTCCGATGGACCGAGAAAGGACAACGAGCTGGATGAATAATAAAGAACTACATAACGTACCC
CGTAGTAGTAGGTCTACCGGGCGCGGAAAGAGGCATGAATATAAGAGAGGACAGCAATGCATTAATGGCAGGATTGGGAGAATCGATAGCTCAACAGTAC
AGCGCAGAGATACATGGTCATTGAAACTCCCTGCGGCAGAAGACTCGTGAAGCGATCGTACAAAGCCCGTTGGCGGCGCGCCAGATGCTGGCCAACCCTA
TGAGAAAGATCGATCAGGCTGCTTCGTGTGGGCGAACGGTTATGATTCATTTAATGTGTGTTTACTAGCCTCGAAGCCGTTACTGAGACGACATCGGTAC
CCCCACACTAGCAATTCCCGAGACTACCTACTTTGGTTTGATCTTCATCGTCCACATGTCCTTACCCTCAACGCCACGCGTGGAGCCCCGATTATGCACG
TGCTGACTATAAGCTTTTCTGGAGCATTCCTATATCAGTCTCTACTCGCGTTCGTGTTCGTCTAGGTGGGCTGCCANCAGCCAGCATGGAATCCTGGGAC
AGCAAGGTCTTGACTTGCGAACGATGGACCGCGCTTCTCCTCTTGGAGCACATGCACAACAATCTTCCTCGCGCCTCTCTCCATCTACTTGTGC
>LE_HBa0028M19_SP6_138457 (trimmed for quality and cloning vector)
TAAAAATAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.4744
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0028M19
Clone
Clone name
hba-28m19
LE_HBa0028M19
P028M19
Clone type
BAC
Contamination
none
Estimated length
128,371
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found