Clone Read LE_HBa0031F10_SP6_139639

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031F10_SP6_139639
Primer
SP6
ID from Seq. Facility
LE_HBa_031_F10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
649 trimmed for vector and quality, 954 raw
Genbank Accession
DU048339
Sequence
>LE_HBa0031F10_SP6_139639 (raw untrimmed)
TCTTGCAATTCTGTAGAGCTCTCCATAGGGTGTCGCCAATTGGTGTTGGAGTCTCTTTGCCTGTAGTCATCCCCCCTAAAGTCCCAGAAAGGTCCTGACT
CTTCCCCAGTTCTTGACTAAACATATCAACCCCAAATTCCTCATCAAGTTTCAATCTGGACAACCCAAAATCAGAAAGCTTAGCTTTGTACTCTGAATCA
AGAAGCACATTGCTAGGCTTAACATCCCCATGAATCACTGGTGGGTCACAATCAAGATGCAAAAATGCCAATGCTCTAGCAACATCAAGAATGGCATCAA
ACCTTCTACCCCAATTCATACACAAACTTGACTCAGAAAAAAGGGATTCTTGTAAACTTCTATTAGGCATATACTCATACACAACAAGTCTTTTATTTCT
CTCAACACAATAACCAAGAAGAGAAACTACAAGAGGAGATTTTATCCCACCAAGAATCTGAAGCTCATTCTGAAACTCCCTTTCACTCTGAAATGAACCA
GAGTCCAATAACTTAACAGCAACCAATTTCCCATCTCTAAGAATCCCTTTGTATACAGTTCCAGATCCCCCTTTTCCTATTGAAGTGGAATCACTAAAAC
CTTCAGTTGCTGACTTCAACTCTTTGTAACTAAACCTGTGAAGCTTAACAAGGGGTGTAATGGAATCATAAGGATTAGTACGAGAACGATGCACCAATGA
ATACCAAAGATAGTAAAGAAAATAAAGAATGGCAAACAAGATTTTAAGTGAAGCTGAGACTGTAAAGGAGAGAAAAAATATGCCTGACATGGGTTTTGGG
ATTGAAGGAATTGGCTGTCTTGAATCCTTGCTATCAAAATTTAAAAATCTTAATCAATTGGGGCAAAGAATTCAAGAAAGTGAGACTTCTGAAGATTTAA
GATTTTTTGGCAGTTCTGAAAGGGGAGAAGGGAAGATTTGGTTTATATGGGTAC
>LE_HBa0031F10_SP6_139639 (trimmed for quality and cloning vector)
TGCCTGTAGTCATCCCCCCTAAAGTCCCAGAAAGGTCCTGACTCTTCCCCAGTTCTTGACTAAACATATCAACCCCAAATTCCTCATCAAGTTTCAATCT
GGACAACCCAAAATCAGAAAGCTTAGCTTTGTACTCTGAATCAAGAAGCACATTGCTAGGCTTAACATCCCCATGAATCACTGGTGGGTCACAATCAAGA
TGCAAAAATGCCAATGCTCTAGCAACATCAAGAATGGCATCAAACCTTCTACCCCAATTCATACACAAACTTGACTCAGAAAAAAGGGATTCTTGTAAAC
TTCTATTAGGCATATACTCATACACAACAAGTCTTTTATTTCTCTCAACACAATAACCAAGAAGAGAAACTACAAGAGGAGATTTTATCCCACCAAGAAT
CTGAAGCTCATTCTGAAACTCCCTTTCACTCTGAAATGAACCAGAGTCCAATAACTTAACAGCAACCAATTTCCCATCTCTAAGAATCCCTTTGTATACA
GTTCCAGATCCCCCTTTTCCTATTGAAGTGGAATCACTAAAACCTTCAGTTGCTGACTTCAACTCTTTGTAACTAAACCTGTGAAGCTTAACAAGGGGTG
TAATGGAATCATAAGGATTAGTACGAGAACGATGCACCAATGAATACCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.938738
Expected error %
0.0877
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g80870.1 Score 259 E Value 1e-69 Identity 20.60% Align. Length 644bp (99.23%) Frame 3
68414.m09489 protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g45590.1 Score 162 E Value 1e-40 Identity 15.60% Align. Length 614bp (94.61%) Frame 3
68415.m05669 protein kinase family protein contains protein kinase domain, Pfam:PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_178202.1| Score 259 E Value 5e-68 Identity 20.60% Align. Length 644bp (99.23%) Frame 3
protein kinase family protein [Arabidopsis thaliana] gb|AAF14675.1| Contains similarity to gb|U82481 KI domain interacting kinase 1 from Zea mays and contains PF|00069 Eukaryotic protein kinase domain. ESTs gb|H77140, gb|H76842 and gb|AI994303 come from this gene. [Arabidopsis thaliana] pir||E96841 hypothetical protein F23A5.23 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO50657.1| Score 162 E Value 6e-39 Identity 15.60% Align. Length 614bp (94.61%) Frame 3
putative protein kinase [Arabidopsis thaliana] gb|AAO22616.1| putative protein kinase [Arabidopsis thaliana] gb|AAC06160.1| putative protein kinase [Arabidopsis thaliana] pir||T00872 probable protein kinase At2g45590 [imported] - Arabidopsis thaliana ref|NP_182083.1| protein kinase family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031F10
Clone
Clone name
hba-31f10
LE_HBa0031F10
C03HBa0031F10
P031F10
Clone type
BAC
Contamination
none
Estimated length
120,448
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found