Clone Read LE_HBa0044D05_SP6_142605

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0044D05_SP6_142605
Primer
SP6
ID from Seq. Facility
LE_HBa_044_D05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 897 raw
Sequence
>LE_HBa0044D05_SP6_142605 (raw untrimmed)
CCCCCTTCTGTGGTAAAGAGGACCAACCNACCACACACCCCCCCCCCACCACACCCACCAAAACACAAAAAGAACAACACCGCCACAAACAAACAAAACA
AACCCACCACCAAAAAAAAACGGGACACACGGAGAGAGGAGGAGTCGACACAAACGGATGTTCATGGCTCTAATGCTAAGCCGGGAGACTCTGTCAAGAA
ACGTGGCGTTCCACATCCTGAATGAGAAGACTGCCCCCGGTCTATTGAGCGCTCTGTTAAACGTTTATGAAAAAGCACCGGCGAGAAGC
AAGGTATATTA
AATGCGGGGATTGACCATTTACAGCATGTCTGAGAGTGATCCGTTGGCGATCGTGGACACGAGTCCGAGGGGAGTGTGAGTCAACACAATTCATGTGGAT
ATTAATTCCGAAGATTAAATTAAGGCGTTGATTTTGAGGCCATCTCTGCCGGAGGCTAGGGACAGAGTGGTCGCTGCGTGCAGCAAATCCCGTGTGATTT
GAGAGTACTGAATTTCGATGAACTCCGTGATGTTGTTGCTTGTACGAAAGTAATCCCCACACGAGAAAGTGGGAGCATTCATCGGGCACCGCCCCGCAGC
CTTGATCCAAGGGGGAGAAGTAATACGAAAGGCGGTAGTCCGCATGGAAACTTCTGTATCAACTTATTCGAGAAATATCACCAAACAGATAAAACGTTAC
TTTGTGGTACTGTGAAAAAACCCCCCCTACTTTCTTAACCACTGGTCAAAGCCCACAGATAAAACTCGAATCAGAAATTTGGAGATTACCATGACTCCCG
GTCATTCATCACCGGGACACTGGGGAACCGTCCTACTCCAAGCGCCCACCAACACAGCAGGGAAGAGAGGAATCCCTGCGCCGGGACGTCACCTGCC
>LE_HBa0044D05_SP6_142605 (trimmed for quality and cloning vector)
AAGGTATAT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.3091
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0044D05
Clone
Clone name
hba-44d5
LE_HBa0044D05
P044D05
Clone type
BAC
Contamination
none
Estimated length
27,295
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found