Clone Read LE_HBa0170F21_SP6_14488

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170F21_SP6_14488
Primer
SP6
ID from Seq. Facility
LE_HBa_170_F21-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 896 raw
Sequence
>LE_HBa0170F21_SP6_14488 (raw untrimmed)
GGGGGGGGGGTTCCGTTTTTTCTCAATAGTCCGCCTCTTTTTAGAGGGGCGATCTTGTAGATCTCAATATCGTCAAACCCAGCATCCCAACAATGGGTGC
GCATGTAGTATGCACGGAGTCTTCCGTAAAGCAATGAGATGTGGTCCTGTGATTTCGTCTTCATCTTTGGTAAGCGATGATTTCTCTATG
TTTCATCGAT
CGGAACGTGATAAATCTTGCATTCAGTTACGGCCCTAGTATTATCTTCCCTATCACTAAAAAGGCAGATATAACTAATTAGATGCTCATAATATACTATG
AAATGTTAATAGCTTAGACCGATTACATTGTCTTACTTGAATTGGCTCCTTCGGTAGTTCGTCATGTAGCGTTCAAATCAAATTGCAAAACGTGACCGTT
CGTTTCTTATTCATCAAACAGGGCTGACGTCCCAAATCAGCCTCTTGTGGGGGGAGGGGACTAAAACTGCTTTTTTTTTTTTTTTTCCTCCCCCCCCCCC
AATTCGGTCATGTTCTCTACATAAAAAAAAAAAAAAAGAGGGGGGAATGTTTTTGGTACTCAATTTATCTTTTTTCTCTCTCCTCATCCTCAATCCTTCA
AGTTACTCGATGACACGAGTCCAGTGATGAATTTTTACTACTGACATAACAAAGATACTTGTTTGTCTTTTCACTTTATCTACTTCATACTCTCGTCACA
CCTACGTAAAGTTTAATTTATATCGCCTGCAGTTGTGTGTCCTATGACGAACGTCAGCATTCCTCCGTCGTAGTTTATTGACATGCCTTACTCTTAGTAT
CCTCATTGTTTTGCTTGCTTCTTTGCCACTCTTTCTTACCTATTCAGACCTCTAATATTTTACAGATACGACGGATGACTGTTCGCTATTGCTGTC
>LE_HBa0170F21_SP6_14488 (trimmed for quality and cloning vector)
TTTCA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.584491
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170F21
Clone
Clone name
hba-170f21
LE_HBa0170F21
P170F21
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found